PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01667.50
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 225aa    MW: 25979.3 Da    PI: 6.7145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01667.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
    Jcr4S01667.50 16 KGPWSPAEDLRLITFIQKHGHENWRALPKLAGLLRCGKSCRLRWINYL 63
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-23766IPR009057Homeodomain-like
PROSITE profilePS5129420.5341167IPR017930Myb domain
SMARTSM007171.2E-121565IPR001005SANT/Myb domain
PfamPF002495.5E-151663IPR001005SANT/Myb domain
SuperFamilySSF466892.76E-221790IPR009057Homeodomain-like
CDDcd001671.67E-91863No hitNo description
PROSITE profilePS500905.72664115IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-96790IPR009057Homeodomain-like
SMARTSM007173268196IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGKGRAPCCD KSQVKKGPWS PAEDLRLITF IQKHGHENWR ALPKLAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTKEEEDTI IKLHQTLGNN IAMATELDDH HQWPKKKPRV LYDNRACAVH  120
HNNNTLEEVN KPEIQEISTI DIPFESDFDF WNMLDGLNDN NSYQSSSTEV EDQLNSQSSS  180
SIGDVENRKW LRYLENELGL ETSKDGHQSL SXXXXXXXXX XXNVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-151697484MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-15169758138MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-15169758138MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-151697484C-Myb DNA-Binding Domain
1msf_C2e-151697484C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346711e-161KM034671.1 Jatropha curcas clone JcMYB051 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087459.11e-70transcription factor MYB63
TrEMBLA0A067JMG33e-69A0A067JMG3_JATCU; MYB family protein
STRINGXP_002513377.11e-56(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.11e-55myb domain protein 72