PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01668.10
Common NameJCGZ_05423
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 371aa    MW: 42001.4 Da    PI: 8.7903
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01668.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.1e-07197219123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C+ Cgk F+r  nL+ H+r H
  Jcr4S01668.10 197 HYCQVCGKGFKRDANLRMHMRAH 219
                    68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.4E-6195223No hitNo description
Gene3DG3DSA:3.30.160.601.2E-6197223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034197219IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653197224IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SMARTSM0035581258291IPR015880Zinc finger, C2H2-like
SMARTSM0035522296318IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
DDTFVSSSIV EASSTMEISS HSKSLLYSLS LLKEKVNQVQ SLVSIIISPD QTAQQPESTS  60
LAITRMSTMI QEIIVTASSM VFTCQQMGTS NPSTNQLHRP AVANANRVQE NELLQSNFGG  120
SDRGKSYFSS ETFDWYGENY NSYNSNRGMV VISNNNNKME NKRENVENNI EEKLSSVMKN  180
YDIIELDAAD LLAKYSHYCQ VCGKGFKRDA NLRMHMRAHG DEYKTHAALS NPMKNSRSEG  240
DDIDNNDKES RLKLPRKYSC PQEGCRWNKK HVKFQPLKSM ICVKNHYKRS HCPKMYVCKR  300
CNRKQFSVLS DLRTHEKHCG DVKWQCSCGT TFSRKDKLMG HVALFIGHSP ATTATSSSTK  360
PATTEMEFKC N
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532575.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ0WT241e-114STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A067L6580.0A0A067L658_JATCU; Uncharacterized protein
STRINGcassava4.1_031762m1e-167(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-106C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]