PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01683.50
Common NameJCGZ_16490
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 470aa    MW: 51089 Da    PI: 9.4751
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01683.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056587123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  Jcr4S01683.50 65 FVCEICNKGFQRDQNLQLHRRGH 87
                   89*******************88 PP
2zf-C2H212.90.00034141163123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H +t+
  Jcr4S01683.50 141 WKCEKCSKKYAVQSDWKAHSKTC 163
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.44E-76487No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496587IPR007087Zinc finger, C2H2
SMARTSM003550.0176587IPR015880Zinc finger, C2H2-like
PfamPF121717.4E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355100106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.44E-7136161No hitNo description
SMARTSM00355140141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MMSGEAFSIP SSLPGFALQE QNANPNPKPN PNPAAKKKRN LPGTPDPDAE VIALSPKTLM  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTNKE VKKKVYICPE KTCVHHDPSR  120
ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYKC DCGTLFSRKD  180
SFITHRAFCD ALAEESSGVE DIADINVSQF SSAGFRADFN GYQNPGLSLW LNQANSQMNP  240
ANTLYPSSSS TGLPIYGSSS SNTSFGNLSL SGLAHGLKEE EGDNKGTNLV DSSLPSLYSD  300
NNSNQNKQSK STGPMSATAL LQKAAQMGST RSNNQSFFAS NNHYGIMSSS SSSNATNINS  360
LSQVFQNVSN KQPGEFNLTA TPGSVAMRDS IMASSTSLDQ VLIMQSSGKH NDPVQLKLQQ  420
GNSSSIENDL TRDFLGMSGG QSGRPFLPQD LAKFASISSA MGLSQFTSNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36137206372Zinc finger protein JACKDAW
5b3h_F2e-36137206372Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082336.10.0zinc finger protein JACKDAW
TrEMBLA0A067JYQ70.0A0A067JYQ7_JATCU; Uncharacterized protein
STRINGcassava4.1_032876m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-100indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]