PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01683.60
Common NameJCGZ_16489, LOC105642379
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 268aa    MW: 30908.7 Da    PI: 7.4928
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01683.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.4e-53111381128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhP+deel+v+yLk+kv++++l++ ++i+e+d+yk++PwdLpkk+  +++ewyfF++rd+ky++g r+nra++sgyWkatg+dk++l++ 
  Jcr4S01683.60  11 LPPGFRFHPSDEELIVHYLKNKVASRTLPA-TIIAELDLYKYNPWDLPKKALFGDDEWYFFTPRDRKYPNGARPNRAAASGYWKATGTDKPILTSr 105
                    79****************************.89***************8888899*************************************9984 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++  +g+kk Lvfykgr pkg ktdW+mheyrl
  Jcr4S01683.60 106 GTLSIGVKKALVFYKGRPPKGIKTDWIMHEYRL 138
                    5556***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-629166IPR003441NAC domain
PROSITE profilePS5100560.73711166IPR003441NAC domain
PfamPF023659.4E-2812138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
METKPTLDIH LPPGFRFHPS DEELIVHYLK NKVASRTLPA TIIAELDLYK YNPWDLPKKA  60
LFGDDEWYFF TPRDRKYPNG ARPNRAAASG YWKATGTDKP ILTSRGTLSI GVKKALVFYK  120
GRPPKGIKTD WIMHEYRLLQ TTVAYNPKRK GSMRLDDWVL CRVRQKSSLP RSTWEDRNNP  180
EGYLPENLSC IEKASSICLQ SSDYYPDTID TDHFEVTSYD VDTDQQENFA TTVSKNGTDM  240
NFYGLINNQS NVSNFNCDPW NSHMQCQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-7221686170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753001e-161KC775300.1 Jatropha curcas NAC transcription factor 022 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082588.10.0NAC domain-containing protein 67
SwissprotK4BNG75e-80NAP2_SOLLC; NAC domain-containing protein 2
SwissprotQ8GY426e-80NAC25_ARATH; NAC transcription factor 25
TrEMBLR4N7L10.0R4N7L1_JATCU; NAC transcription factor 022
STRINGcassava4.1_023969m1e-120(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-82NAC domain containing protein 25
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]
  4. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]