PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01684.70
Common NameJCGZ_09301
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARR-B
Protein Properties Length: 437aa    MW: 49282.2 Da    PI: 5.1582
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01684.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.26.4e-22185238155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k r+ WtpeLH +F  a+++L G +kA Pk ile+mkv+ Lt  +v+SHLQkY++
  Jcr4S01684.70 185 KSRILWTPELHMKFTAAISEL-GDKKARPKPILEIMKVPNLTQRQVASHLQKYKS 238
                    689******************.9******************************86 PP
2Response_reg44.58.1e-16211261107
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    +l+vd +   ++ l+++le+  y +v+++++++ al ++ke++  + l +   ++p+md +++l  ++e +  +p+i+++++ + + +++ +  Ga
  Jcr4S01684.70  21 ILLVDNDTPSLMYLASLLEQYTY-NVTTTEQASIALSMVKEQKtrFKLAMAATNLPDMDTIAFLHVLNEYN--IPVILMSSERSISVVIKSIAEGA 113
                    89*********************.***************999989**********************9955..*********************** PP

                    SEEEESS--HHHH CS
   Response_reg  95 kdflsKpfdpeel 107
                      +l Kp+  ++l
  Jcr4S01684.70 114 TFYLQKPIFFDDL 126
                    *******977776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.85E-2217152IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.6E-2317160No hitNo description
SMARTSM004485.5E-1119130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.12520134IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-1321127IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.83E-1422133No hitNo description
PROSITE profilePS5129411.136182241IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-24183242IPR009057Homeodomain-like
SuperFamilySSF466894.12E-16183242IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-19185238IPR006447Myb domain, plants
PfamPF002494.8E-6190237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEVGKQVPII CIPSFARGLR ILLVDNDTPS LMYLASLLEQ YTYNVTTTEQ ASIALSMVKE  60
QKTRFKLAMA ATNLPDMDTI AFLHVLNEYN IPVILMSSER SISVVIKSIA EGATFYLQKP  120
IFFDDLKYVW QHAYRKKKTP TDSQQDQGDA QKSTDKQIME ENKKIATEEK ENKENKNNNN  180
STEKKSRILW TPELHMKFTA AISELGDKKA RPKPILEIMK VPNLTQRQVA SHLQKYKSQV  240
QRICEAGTAN LPALSKPYNN FYARILEKLD NKTTPNCGFR IPSGKTPELN YLKGQCMTIP  300
SGKETNEFKV PKAVSMDGIE KLASVEVSNA KTAIDQPYAN NSLPNFDEWS RELEMMPILD  360
PSMEVPELDK ILTSSDDASN NMEAPRNISS PPASTVNEDQ PSLLKFADDL LNIMEEEPAT  420
GEPNPSDVDR YCEWLIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-14181243163ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067KJ090.0A0A067KJ09_JATCU; Uncharacterized protein
STRINGcassava4.1_021193m1e-91(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144041618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.14e-43response regulator 12
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]