PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01700.30
Common NameJCGZ_06573, LOC105629442
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 268aa    MW: 30581.3 Da    PI: 4.6876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01700.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM737.4e-2391332128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     +G+rF Pt+e+lv++yL++k++++   ++++ ik++ d+y+ ePw++   +++   + yf++ ++ k+++ +r++r+t sg+W     +k++ + 
  Jcr4S01700.30   9 SVGYRFCPTEEDLVCFYLQEKLHKTLPVIADAfIKTLdDLYSDEPWNIF--CNEAPVNGYFYVFTKLKTRSANRSKRTTPSGTWTGRN-SKDIPC- 100
                    68********************99997776766**9999*********6..33444577999999999999*************8654.477777. PP

            NAM  96 kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                     ++ + ++k +vf  kg+a ++++ +W+m e++l
  Jcr4S01700.30 101 -HNITYVRKYFVFDaKGEAASSSNGHWTMYEFSL 133
                    .67899*******9788***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-246150IPR003441NAC domain
PROSITE profilePS5100527.1588150IPR003441NAC domain
PfamPF023651.9E-1510133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAGSPFMLSV GYRFCPTEED LVCFYLQEKL HKTLPVIADA FIKTLDDLYS DEPWNIFCNE  60
APVNGYFYVF TKLKTRSANR SKRTTPSGTW TGRNSKDIPC HNITYVRKYF VFDAKGEAAS  120
SSNGHWTMYE FSLKDERFKG DYVLCKIKCE DKSQQGTAAT VTFLDGKKRK SSVEKEEEND  180
NSKKMRQDNL SSVNPNPSWH LSNVVLVDYE SSFSNQIAEI EAPINDTDIG FLDVASPPSN  240
LIEKSPILVD TDIDVYDYLL DELLEQWC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753680.0KC775368.1 Jatropha curcas NAC transcription factor 090 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066430.10.0protein FEZ
TrEMBLR4NEY30.0R4NEY3_JATCU; NAC transcription factor 090
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.11e-15NAC domain containing protein 11
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]