PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01706.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 124aa MW: 13310.8 Da PI: 8.7342

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01706.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	33.6	1.1e-10	76	102	1	27
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqp 27 +CaaCk+lrr+C+++C la yfp++ Jcr4S01706.10 76 PCAACKILRRQCTDKCYLASYFPSTTV 102 7**********************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.656	75	124	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-8	76	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MAKYPFVFPS TFSNSQSSIP SSSSSSPSPS FYSSSSYPSS PSLTSPFQPS HQSLPSPPSQ 60 NSSNHFSWPS KDVVGPCAAC KILRRQCTDK CYLASYFPST TVYHIISLSL VVSSDSAMST 120 SSCR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020535325.1	5e-36	transcriptional corepressor LEUNIG
TrEMBL	A0A067K8U3	1e-31	A0A067K8U3_JATCU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	7e-09	LOB domain-containing protein 11