PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01764.60
Common NameJCGZ_06564, LOC105629416
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 233aa    MW: 26438.9 Da    PI: 5.1785
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01764.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM661.1e-2081191115
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lp+G+rF Pt+eelv++yL++k++++   + ++ ik++ d+y+ ePw++   ++++  + yf++ ++ k+++ kr+ r+t sg+W a  + k++ +
  Jcr4S01764.60   8 LPVGYRFCPTEEELVCFYLQEKLHKTLPVIVDAfIKTLdDLYSDEPWNIF--CNETPVNGYFYVFTKLKSRSAKRSMRTTPSGTWTARSS-KDIPC 100
                    799********************99986666666**9999*********6..3333447799999999999**************98865.88888 PP

            NAM  95 kkgelvglkktLvfykgrapk 115
                      ++ + +kk +vf  +++++
  Jcr4S01764.60 101 --RNITYVKKDFVFKAKENSE 119
                    ..67899*******9554333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-185118IPR003441NAC domain
PROSITE profilePS5100517.5088153IPR003441NAC domain
PfamPF023652.7E-139117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAGNPFMLPV GYRFCPTEEE LVCFYLQEKL HKTLPVIVDA FIKTLDDLYS DEPWNIFCNE  60
TPVNGYFYVF TKLKSRSAKR SMRTTPSGTW TARSSKDIPC RNITYVKKDF VFKAKENSEQ  120
GTAATVPFLD GKKRKSPAEK EEENDNSKKM RHNNLSSVNP NSSCHSSDLV LADYKSIYSN  180
QITEGEVALT DTDIVFLDAV SPPTNLVEKS PILVDADIGV YDHLLDELLE RWC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753640.0KC775364.1 Jatropha curcas NAC transcription factor 086 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066401.11e-167NAC domain-containing protein 30
TrEMBLR4N5T51e-166R4N5T5_JATCU; NAC transcription factor 086
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.13e-10NAC-domain protein 101
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]