PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01772.80

Common Name

JCGZ_05549

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 434aa MW: 48198 Da PI: 9.4045

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01772.80	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Jcr4S01772.80 6 FICEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.1	0.00059	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Jcr4S01772.80 83 WKCEKCSKKYAVQSDWKAHSKIC 105 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.15E-7	5	28	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	5.0E-5	6	28	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	6	28	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	48	78	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.3E-4	71	104	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.15E-7	78	103	No hit	No description
SMART	SM00355	140	83	103	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYIC PEKSCVHHDP 60 SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKICGTREY RCDCGTLFSR 120 KDSFITHRAF CDALAEESAR FTSVSAAMNA NFRSNIVNEA TNSNNQFSSL YRPEFRSEIV 180 GVDMGVDGHK PRLGTWLENA NIPQFNPIGV PSNSNAFLAP NSTCLPELVQ TQAQWLNKYQ 240 EASFAGCSNA LSVSTLARGL KEEQGINKGD FSESTATFYS SAQQRSSSVS TIAHMSATAL 300 LQKAAQMGST VSNPTFTSPS NEFSLSNMSN FSNSETLKYV SGKQQDSNQV DNLNVLANSP 360 FIKDGSLLMI QANGTKSHRS SSSEVLEGSL TRDFLGVGGE TTTRPFLQQE LAKFGSITST 420 MDLSQYNSGH HHRV

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYIC PEKSCVHHDP  60
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKICGTREY RCDCGTLFSR  120
KDSFITHRAF CDALAEESAR FTSVSAAMNA NFRSNIVNEA TNSNNQFSSL YRPEFRSEIV  180
GVDMGVDGHK PRLGTWLENA NIPQFNPIGV PSNSNAFLAP NSTCLPELVQ TQAQWLNKYQ  240
EASFAGCSNA LSVSTLARGL KEEQGINKGD FSESTATFYS SAQQRSSSVS TIAHMSATAL  300
LQKAAQMGST VSNPTFTSPS NEFSLSNMSN FSNSETLKYV SGKQQDSNQV DNLNVLANSP  360
FIKDGSLLMI QANGTKSHRS SSSEVLEGSL TRDFLGVGGE TTTRPFLQQE LAKFGSITST  420
MDLSQYNSGH HHRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-37	79	145	3	69	Zinc finger protein JACKDAW
5b3h_F	3e-37	79	145	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	45	KLKQRSNKEVIRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012064850.2	0.0	LOW QUALITY PROTEIN: protein indeterminate-domain 9
TrEMBL	A0A067L6M6	0.0	A0A067L6M6_JATCU; Uncharacterized protein
STRING	cassava4.1_005556m	0.0	(Manihot esculenta)
STRING	cassava4.1_007089m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-88	C2H2-like zinc finger protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]