PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01774.70
Common NameJCGZ_00598, LOC105649042
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 840aa    MW: 91669.6 Da    PI: 6.5662
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01774.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.16.1e-1274568132374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lLl+cAeavs +++e+a+++L ++sel++p+g++ qR+aayf eA++arl++s+ ++y++lp+ + s  ++++ ++a+++f+ +sP++kfsh+t
  Jcr4S01774.70 456 LTLLLQCAEAVSVDNFEEANKMLLEISELSTPYGTSAQRVAAYFSEAMSARLVNSCLGIYATLPSMPIS--HTQKMASAFQVFNGISPFVKFSHFT 549
                    579************************************************************999998..6889999****************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                    aNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va+++ +l++e+
  Jcr4S01774.70 550 ANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLSDFAQKLGLPFEFFP-VADKVGNLDPER 640
                    ****************************************************....***************************.7*********** PP

           GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                    L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE++l
  Jcr4S01774.70 641 LNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQL 729
                    **************9..999999999999....**********************.899************************************* PP

           GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    l+rei+nv+a  g +r+ + + +++Wre+l+++GFk ++ls +aa+qa lll +++ dgy++ e++g+l lgWkd  L+++SaWr
  Jcr4S01774.70 730 LSREIRNVLARGGPSRTGDLK-FHNWREKLRQSGFKGISLSGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWR 813
                    ***************999887.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.053429793IPR005202Transcription factor GRAS
PfamPF035142.1E-124456813IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MAAFAENGGD TELNGSNSND SKSNSHSHSH STTASSSKTQ VITGIEGKGK MVRKRMACEM  60
MEVQAANQNQ RCYRRISSNT NNNNSLLDDN SNIIGYSSLT NTVNPNQNPN PNSYPSLNNY  120
STMMSMTMLP SSTNLTSMTS GGSVSVSLCG FLSSTGTTNF TCNDTLSSSP QPHPPQSQLQ  180
TPAVCGFSGL PLFPSERERN RNAVVPVVVT TTSTTCSSTP LPPTPTPTPT TMEDASATAW  240
IDGIIKDLIH SSTNVSIPQL IQNVREIIFP CNPSLASLLE YRLRSLVEPI PNYPAAVDRR  300
RKDAVPARDY NNQGQSSSGL TLNLENVNIY SSLPDSTAAA SVTAPPVLNQ YSSWVSSPPL  360
VCQTNNQVHL VHDQQQQQQE ASPSSTSVTP PLLALNQTHP QQQEQEKSSS AETEAAATTG  420
IVTTPTSLPA AAGTSVREKK EELRQQKRDE EGLHLLTLLL QCAEAVSVDN FEEANKMLLE  480
ISELSTPYGT SAQRVAAYFS EAMSARLVNS CLGIYATLPS MPISHTQKMA SAFQVFNGIS  540
PFVKFSHFTA NQAIQEAFER EDRVHIIDLD IMQGLQWPGL FHILASRPGG PPYVRLTGLG  600
TSMEALEATG KRLSDFAQKL GLPFEFFPVA DKVGNLDPER LNVSKREAVA VHWLQHSLYD  660
VTGSDTNTLW LLQRLAPKVV TVVEQDLSHA GSFLGRFVEA IHYYSALFDS LGASYGEESE  720
ERHVVEQQLL SREIRNVLAR GGPSRTGDLK FHNWREKLRQ SGFKGISLSG NAATQATLLL  780
GMFPCDGYTL VEDNGTLKLG WKDLCLLTAS AWRPFHATTN TGTIHQYHHH HLHHHRFATA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04398143380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052620.0KM405262.1 UNVERIFIED: Jatropha curcas GRAS27 protein-like (GRAS27) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090957.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A067JD880.0A0A067JD88_JATCU; Uncharacterized protein
STRINGcassava4.1_001737m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]