PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01784.40
Common NameJCGZ_16114, LOC105630934
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 242aa    MW: 26934.9 Da    PI: 8.0159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01784.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.2e-143279455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    h   Er RR+++++ f  L +llP++   p  K +K++i+ +Av+YIksLq
  Jcr4S01784.40 32 VHILTERERRKKMRNMFTSLHSLLPQL---P-NKADKSTIVDEAVKYIKSLQ 79
                   58899*********************7...3.79*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.52E-142783No hitNo description
SuperFamilySSF474596.9E-172895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.8752878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-163191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-113279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-113484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.0E-5159222No hitNo description
Gene3DG3DSA:3.30.70.2603.4E-4163237No hitNo description
PROSITE profilePS516719.315164242IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAEKVVALLG QKRSRNRDTV NHGGGGESEH EVHILTERER RKKMRNMFTS LHSLLPQLPN  60
KADKSTIVDE AVKYIKSLQE TLQTLEKQRQ EKLQGATIVD SIGQSLITSP TEALFESREA  120
FLAIQGPSKG YPMHNSFPVT LSPACYQTWF SPNVVMSMCG DDAQISVCTL KRPGLLTSIF  180
YILEKHKLDV VSAHVSSEQF RSIYMIHVHA AGGASGRYPE ALSVEDTFKL AAGEMNLWIL  240
SC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11116KRSRNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068322.10.0transcription factor bHLH95
TrEMBLA0A067KZY30.0A0A067KZY3_JATCU; Uncharacterized protein
STRINGcassava4.1_028789m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-43bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]