PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01785.10
Common NameJCGZ_09223, LOC105636855
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 726aa    MW: 79909.1 Da    PI: 5.4465
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01785.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-18563357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Jcr4S01785.10  5 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                   6789*****************************************************97 PP
2START135.55.7e-4318032862204
                    HHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEE CS
          START  62 veellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSg 151
                    v+e+l+d++ W ++++ +++l vi +g  g+ +l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++ ++  p    +ss+vRae+lpSg
  Jcr4S01785.10 180 VAEILKDRPSWFRDCRCVDILSVIPTGngGTCELIYMQTYAPTTLAAaRDFWTLRYTTTLEDGSLVICERSLTTTTGGPVgppTSSFVRAEMLPSG 275
                    889999999********************************************************************999999************* PP

                    EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
          START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                    +li+p+++g+s +++v+hvdl++++++++lr+l++s+ + ++k+++a+l++ +
  Jcr4S01785.10 276 YLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAALRHIR 328
                    *************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.677164IPR001356Homeobox domain
SMARTSM003897.1E-15268IPR001356Homeobox domain
CDDcd000863.14E-16565No hitNo description
SuperFamilySSF466892.44E-16567IPR009057Homeodomain-like
PfamPF000464.7E-16563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-18763IPR009057Homeodomain-like
CDDcd146861.95E-65796No hitNo description
SMARTSM002344.0E-33119330IPR002913START domain
SuperFamilySSF559614.53E-31153332No hitNo description
PROSITE profilePS5084821.345153339IPR002913START domain
PfamPF018528.0E-40180328IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-19182325IPR023393START-like domain
PfamPF086708.4E-23648725IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVY ENGYMRQQLQ TASATTTDNS  120
CESVVMSGQQ QQQNPTPQHP QRDANNPAGL LAIAEETLAE FLSKATGTAV DWVQMIGMKV  180
AEILKDRPSW FRDCRCVDIL SVIPTGNGGT CELIYMQTYA PTTLAAARDF WTLRYTTTLE  240
DGSLVICERS LTTTTGGPVG PPTSSFVRAE MLPSGYLIRP CEGGGSIIHI VDHVDLDAWS  300
VPEVLRPLYE SSKILAQKMT MAALRHIRQI AQETSGEIQY GGGRQPAVLR TFSQRLCRGF  360
NDAVNGFADD GWSLLGGDGV EDVTIGVLCA KASMLLQNVP PALLVRFLRE HRSEWADYGV  420
DTYSAACLKA SPYAVPCARP GGFPSSQVIL PLAHTVEHEE FLEVVRLEGH AFSPEDVALA  480
RDMYLLQLCS GVDENAVGAC AQLVFAPIDE SFADDALLLP SGFRVIPLDP KTDGPAATRT  540
LDLASTLEVG PGGARPSGEA DTSSYNLSVV GSVQRVAMAI SPSRLSSQIG PKSLPGSPEA  600
ITLAQWISRS YRIHTGGDLF RVDSQAGDAL LKQLWNHSDA IMCCSLKTNT LQDIMLDKIL  660
DEAGRKILCS EFSKIMQQGF AYLPAGICVS SMGRPVSYDQ AIAWKVLNDD DSNHCLAFMF  720
MNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196190.0AY919619.1 Populus trichocarpa class III HD-Zip protein 4 (HB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075627.10.0homeobox-leucine zipper protein ATHB-14
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A067KRL60.0A0A067KRL6_JATCU; Uncharacterized protein
STRINGcassava4.1_001619m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]