PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01829.10

Common Name

JCGZ_14164

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 193aa MW: 22735.2 Da PI: 5.8879

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01829.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130.3	1.4e-40	5	121	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 G+rFhPt++el+++yLk+kv g + e+ + i++v+++++ePw+Lp + ++ ++ wyfF++r+ ky++++r++r+t+ g+Wk tgkd+++++ Jcr4S01829.10 5 IGYRFHPTEDELINHYLKHKVLGYDDEV-SDIPQVNVLDYEPWELPLT-ANADQVWYFFCERNYKYKNSQRAKRTTRCGFWKVTGKDQKIKD---- 94 69*********************999.56***********54.45689********************************98.... PP NAM 99 lvglkktLvfykgrapkgektdWvmheyr 127 + +kk Lv+++gr p ++t+Wvmhey+ Jcr4S01829.10 95 -IAIKKRLVYHQGRPPG-VRTSWVMHEYH 121 .9*****988775.9*******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-40	3	128	IPR003441	NAC domain
PROSITE profile	PS51005	34.54	3	147	IPR003441	NAC domain
Pfam	PF02365	5.0E-25	6	121	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
METGIGYRFH PTEDELINHY LKHKVLGYDD EVSDIPQVNV LDYEPWELPL TANADQVWYF 60 FCERNYKYKN SQRAKRTTRC GFWKVTGKDQ KIKDIAIKKR LVYHQGRPPG VRTSWVMHEY 120 HPTFNFRIKK RPDDEDEDED VPQPSTTMAS ASGNNPTEED SQLQAHVASF QGYNEMDYSL 180 NSAMQWGSYY YTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-28	6	121	18	139	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250\|UniProtKB:Q949N0}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, heat and drought stresses. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775346	1e-130	KC775346.1 Jatropha curcas NAC transcription factor 068 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020538560.1	1e-136	NAC domain-containing protein 69
Swissprot	B5X570	7e-36	NAC14_ARATH; NAC domain-containing protein 14
TrEMBL	R4NFZ8	1e-135	R4NFZ8_JATCU; NAC transcription factor 068
STRING	cassava4.1_028212m	3e-86	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	4e-32	NAC 014

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]