PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01839.20
Common NameJCGZ_11693, LOC105640599
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 511aa    MW: 56674.4 Da    PI: 8.252
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01839.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00077424446123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++Cp+C k+F++   L  H r+H
  Jcr4S01839.20 424 HECPICLKVFPSGQALGGHKRSH 446
                    79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-71032No hitNo description
SMARTSM003550.0561032IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.451032IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-41032IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-51033IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-7109136No hitNo description
SMARTSM003550.26114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
PfamPF139120.0096116136IPR007087Zinc finger, C2H2
PfamPF139122.6E-12330355IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388331358IPR007087Zinc finger, C2H2
SMARTSM003550.06331353IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.59E-7331353No hitNo description
PROSITE patternPS000280333353IPR007087Zinc finger, C2H2
SuperFamilySSF576674.59E-7419446No hitNo description
PROSITE profilePS501578.995424446IPR007087Zinc finger, C2H2
SMARTSM003550.071424446IPR015880Zinc finger, C2H2-like
PfamPF139127.4E-13424446IPR007087Zinc finger, C2H2
PROSITE patternPS000280426446IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MKEEQELFKH VCKFCGKSFS CGRSLGGHMR SHMINDISAQ ADGTKLTKKK LPSLPTNNDN  60
NNNNNNGANY SNTISIETSG YGYGYGYGLR ENPKKTWRIA DHSSEDNSSS LVDKSCKDCG  120
KIFHSWKALC GHMKCHSLEK EKVLNNNSME EEQQLQDSST SANNQKQLVM DSQSDNETTT  180
AAPNRRKRSK RRTIRYMGTT NSSSLSFANN TATTTNNNNN ASSSVSEIEQ EQEEVAMCLI  240
MLSRDVGQWG VLNSVSADSS DNNSVSFETN KNNLVTSNPT ETVKVESRKT EYSVSRISRK  300
GFIKNDDTTK KPNHDYDEXY LKNSDRSSSR FECTTCNKVF HSYQALGGHR ASHKKTKGCF  360
ASKIDSSENS IETEQLSPDR TPTERNKLTI KSVNKEVSLD HQLATGYSEN KAETSYGAKK  420
SKGHECPICL KVFPSGQALG GHKRSHLVGG TDQAKTNQTI SIQEPIPPIK DFLDLNLPAP  480
VEEESNGLVG FNSWWIGSSH KHEPLVGLIS N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF5021214e-62JF502121.1 Jatropha curcas clone Jcuint094 SSR sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080350.10.0zinc finger protein ZAT4
TrEMBLA0A067K5C60.0A0A067K5C6_JATCU; Uncharacterized protein
STRINGXP_002514689.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.19e-32C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]