PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01847.50

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 230aa MW: 25756 Da PI: 4.1549

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01847.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	50	6.3e-16	34	61	34	61
zf-Dof 34 kaCrryWtkGGalrnvPvGggrrknkks 61 kaCrryWtkGG+lrnvPvGgg+rk +++ Jcr4S01847.50 34 KACRRYWTKGGSLRNVPVGGGCRKTRRA 61 9***********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-10	34	60	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-10	34	60	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MLSLLLIALV APLLILNFVI TTITVCLSLD ISVKACRRYW TKGGSLRNVP VGGGCRKTRR 60 AKAVRASQTD HLAVVFAKFL NQDSSVNPNE FSNSLTVEKE KVSDLIQESD DFLEGLPPVL 120 LVEDGQQENQ DSIQEFIESP EMDAFGLQTF LGDQEMVHEA LWSDQEAATL SNVLTWESTL 180 LQQQQQQERT QEFDSFTVED QLKASAANLM SDINSWYSFD PSGFEIFSRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012066060.1	1e-130	dof zinc finger protein DOF1.2
TrEMBL	A0A067L3I5	1e-129	A0A067L3I5_JATCU; Uncharacterized protein
STRING	cassava4.1_033042m	1e-61	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	3e-16	Dof family protein