PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01909.50
Common NameJCGZ_25879
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ZF-HD
Protein Properties Length: 233aa    MW: 26032.2 Da    PI: 9.8833
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01909.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer38.52.7e-1257843360
    ZF-HD_dimer 33 geegtaaalkCaACgCHRnFHRreveee 60
                   ge+gt +al+C+AC+CHRnFHR+e + e
  Jcr4S01909.50 57 GEQGTLEALRCSACNCHRNFHRKEIDGE 84
                   6779*******************98865 PP
2Homeobox17.28.9e-06167223153
                    TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                    +r Rt+ft+eq +e+ ++ e    k +++ +++ ++L + +g++ r+ kvW +N + 
  Jcr4S01909.50 167 KRFRTKFTEEQKQEMLNFAEkagwKMQNLEESAVQRLCQGIGIKRRVFKVWMHNNKH 223
                    789************8876677778*****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.6E-95781IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-75784IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.46E-20155227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-29157228IPR009057Homeodomain-like
TIGRFAMsTIGR015652.6E-26166222IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MNNSSPQKDI PFSRNGGYAR AENGRIIATS SVSQPTSGGN TPSILLEDQK PLQEKCGEQG  60
TLEALRCSAC NCHRNFHRKE IDGEHSYHSP MISGYNPGNT LVLGHRSRPP QGYLINPLLS  120
SRRSPTPQMI VSYRSGSVPS EYDEKGNGDD DGDGAVATSP VEKKPKKRFR TKFTEEQKQE  180
MLNFAEKAGW KMQNLEESAV QRLCQGIGIK RRVFKVWMHN NKHQFAKKNS SPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-181672221873ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088426.11e-156zinc-finger homeodomain protein 3
TrEMBLA0A067JK411e-154A0A067JK41_JATCU; Uncharacterized protein
STRINGXP_002518018.11e-85(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.25e-35homeobox protein 31
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]