PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01955.50
Common NameJCGZ_25519
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family SBP
Protein Properties Length: 255aa    MW: 27665.3 Da    PI: 9.0062
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01955.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP49.21.4e-153314876
                   SEEETTT--SS--S-STTTT-------S- CS
            SBP 48 rfhelsefDeekrsCrrrLakhnerrrkk 76
                   rfh+l efD++krsCrrrLa+hnerrrk+
  Jcr4S01955.50  3 RFHQLPEFDQGKRSCRRRLAGHNERRRKP 31
                   9**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114114.717131IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.84E-12335IPR004333Transcription factor, SBP-box
PfamPF031101.7E-8330IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.7E-4318IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MIRFHQLPEF DQGKRSCRRR LAGHNERRRK PPPGSVLSSR YNRLSSTLYD SSNRGGGFLV  60
DFSAYSRLSG RDAWPTGRSS ERSPVNQTAS TGRSIPHPWQ NSSQNPPSNL YLQGSAACGA  120
GFSSSGIPSG ECFTGVGIAD SSCALSLLSN QPWGSRNQEP GLGVNTQGAP MAQSTAPHGA  180
AVNQYSNPSW GFKGSEASSS SHEMCPDLGL GQISQPLNSH FSGELELSQQ NRRQYMELDH  240
SRAFDSSTHH IHWSL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087743.10.0squamosa promoter-binding-like protein 9
RefseqXP_012087744.10.0squamosa promoter-binding-like protein 9
TrEMBLA0A067JP390.0A0A067JP39_JATCU; Uncharacterized protein
STRINGcassava4.1_029311m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-39squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]