PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01973.10
Common NameJCGZ_18763
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 204aa    MW: 21605.4 Da    PI: 10.0874
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01973.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.5e-17115150134
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ kg
  Jcr4S01973.10 115 CTHCGTSSksTPMMRRGPAGPRTLCNACGLKWANKG 150
                    ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062035.2E-164284IPR010402CCT domain
PROSITE profilePS5101713.2654284IPR010402CCT domain
SMARTSM004015.5E-10109166IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-12113162No hitNo description
Gene3DG3DSA:3.30.50.108.7E-16113156IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.3E-15115150IPR000679Zinc finger, GATA-type
PROSITE patternPS003440115142IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.117115157IPR000679Zinc finger, GATA-type
CDDcd002024.12E-15115157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
VQAVLLLLGG YEIPSGIPAT GAVPLNPRGP SDLSGRSIQP QRAASLRRFR EKRKERCFDK  60
KIRYSVRKEV ALRMQRKKGQ FTSAKANSDE AGSASSGWSA TQGSGLDESM LETLCTHCGT  120
SSKSTPMMRR GPAGPRTLCN ACGLKWANKG ILRDLSKVAN MAGQGPPAKP TEQSEGEAND  180
SDAVTLPADI VSSNGDNSAL TAET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14654RRFREKRKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081379.11e-148GATA transcription factor 28 isoform X1
SwissprotQ8H1G09e-66GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A067K1921e-146A0A067K192_JATCU; Uncharacterized protein
STRINGcassava4.1_013130m1e-112(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-59ZIM-like 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]