PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01973.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 207aa    MW: 22912 Da    PI: 4.2319
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01973.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.18e-163672135
           GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Jcr4S01973.40 36 CQHCGISEkaTPAMRRGPAGPRSLCNACGLMWANKGT 72
                   *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.8E-123083IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-113285No hitNo description
Gene3DG3DSA:3.30.50.106.0E-153577IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.35E-143581No hitNo description
PfamPF003208.9E-143672IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403663IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MHRKNGQFAS LKDCYNTDAG SNWEPSNVIS HSESICQHCG ISEKATPAMR RGPAGPRSLC  60
NACGLMWANK GTLRDLTKGG KQISFDQNEM GNIKPSTLER ENPYANRDEE GSPEESKPGP  120
LDSDNSVRPN EQELLETDET PTNPFPMHLE NSSVNINDED LQDTLDDLGN VSSSEFEIPG  180
NFDDQFMIPT YRLTLMNSNM GGEWPGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081381.11e-136GATA transcription factor 19 isoform X2
TrEMBLA0A067K4L31e-135A0A067K4L3_JATCU; Uncharacterized protein
STRINGcassava4.1_010245m1e-107(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.26e-27ZIM-LIKE 2