PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01974.60
Common NameJCGZ_14462, LOC105643357
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 273aa    MW: 30080.2 Da    PI: 8.4864
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01974.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-202171256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  Jcr4S01974.60 21 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 71
                   589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.2E-372184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-282179IPR001471AP2/ERF domain
PfamPF008473.2E-152171IPR001471AP2/ERF domain
PROSITE profilePS5103220.5342178IPR001471AP2/ERF domain
CDDcd000181.32E-282175No hitNo description
PRINTSPR003672.6E-72233IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-202279IPR016177DNA-binding domain
PRINTSPR003672.6E-74460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
METLKNPSPT TKATKAISAR RFVGVRQRPS GRWVAEIKDS SQRVRLWLGT YDTPEEAARA  60
YDEAARALRG ENARTNFASS VNNNNNNNLN SNQSNGGFVS ESDGRHGLSF SSLKAKLSKN  120
LQNIMARTTE TKSTKNRVSD HFTFASIFHF RSQQYQKPVN IKNIEKVVQP SIIVPHAADE  180
PSSWETSSVS DCSNEWIGFR QLGLDSDGSD IGEVSIGDGG FSEQMMGWID SPEISGCSNE  240
GSRSKRFKVS SSVVVPPTFE SPSFCAFPFH GEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1421821476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083844.10.0ethylene-responsive transcription factor ESR2
TrEMBLA0A067JXK00.0A0A067JXK0_JATCU; Uncharacterized protein
STRINGXP_002511793.11e-144(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-15related to AP2 11
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]