PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01993.30
Common NameJCGZ_07710, LOC105638383
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 323aa    MW: 34777.4 Da    PI: 6.244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01993.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-182877255
            AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g
  Jcr4S01993.30 28 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRG 77
                   689******.7*********....4456*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-352891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-292885IPR001471AP2/ERF domain
CDDcd000181.03E-162885No hitNo description
PROSITE profilePS5103220.4552885IPR001471AP2/ERF domain
PfamPF008473.3E-122877IPR001471AP2/ERF domain
PRINTSPR003679.9E-82940IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-202986IPR016177DNA-binding domain
PRINTSPR003679.9E-85167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGAPLGKLSA SPSGGLRGRK KSSRGHHRFV GVRQRPSGRW VAEIKDSLQK VRLWLGTFDT  60
AEDAARAYDD AARALRGDNA RTNFELPQSS TTNYSGAHVD NIEPFSFEDV CGTGSEAEGI  120
LGALKAKLLD NKGLKMFPPS NCSSSRQSGQ IAISSHNNNN SNSSSSISLP YEGDLLLDQW  180
HQTCLVAATE TAAWSNGRAY QVAAAWSTQI NHTVEGVASF ESNAIATNTN NVSTWQFPSG  240
STEPTIDMPY SNLCPVELPT SKQQQQSSLS PKLVGVSYLS RIGNINGTSQ TIDGVAEGVW  300
SSEQQFQPCE NSGWDPLLYA LQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1426841271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077564.10.0dehydration-responsive element-binding protein 1H
TrEMBLA0A067KQP80.0A0A067KQP8_JATCU; Uncharacterized protein
STRINGXP_002518956.11e-87(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-14related to AP2 11
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]