PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02020.20
Common NameJCGZ_06544
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 150aa    MW: 17229.2 Da    PI: 4.165
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02020.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.19.7e-12975265
            NAM  2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevd....iykvePwdLpkkvkaeekewyfFskrd 65
                    pGfrF Pt++elv++yL+ kv++k  + +e v+k++d    +y+ +Pw++ +  k++ ++ yf++ ++
  Jcr4S02020.20  9 RPGFRFCPTEDELVNFYLQSKVDNKLpFYAEAVVKTLDdrrgLYSNKPWNIFS--KETPSNGYFYVFTK 75
                   79*********************9986444344555544555*********62..33344557776554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-11676IPR003441NAC domain
PfamPF023653.5E-81064IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDENSLMLRP GFRFCPTEDE LVNFYLQSKV DNKLPFYAEA VVKTLDDRRG LYSNKPWNIF  60
SKETPSNGYF YVFTKLMMRE DNLTVEQPSV SVSLNASLVD IMVDHVWFRD DISTLSPVDD  120
VDLWFGDAIS TLSPDNRTSE VESANSDHNN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088537.12e-28NAC domain-containing protein 30
RefseqXP_012088538.12e-28NAC domain-containing protein 30
TrEMBLA0A067LE821e-106A0A067LE82_JATCU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.17e-08NAC domain containing protein 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]