PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02022.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 254aa    MW: 29142.1 Da    PI: 9.6493
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02022.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.41.4e-36101381128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lp G+rFhPtdeel+v+yL++kv g +l++ +vi+++d+++++Pw+Lp  +   +++ yfFs++  + +++ r +ra+ sgyWk   k+++++++ 
  Jcr4S02022.10  10 LPIGYRFHPTDEELLVHYLRRKVFGVPLPA-SVIPDFDVFQTDPWTLPGDL---KEKRYFFSRKWGSDSENYRCKRAAGSGYWKPISKSRQIIASl 101
                    699***************************.99***************554...4578***********************************997 PP

            NAM  96 kgelvglkktLvfykgrapkge....ktdWvmheyrl 128
                    ++ ++g+++tL+f++g++++ +    kt+Wvmheyrl
  Jcr4S02022.10 102 SNYVIGVRTTLIFHQGNKHSNNyydsKTQWVMHEYRL 138
                    8889**********987776545555*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-458166IPR003441NAC domain
PROSITE profilePS5100544.19110166IPR003441NAC domain
PfamPF023651.1E-2211138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEKTNFAVKL PIGYRFHPTD EELLVHYLRR KVFGVPLPAS VIPDFDVFQT DPWTLPGDLK  60
EKRYFFSRKW GSDSENYRCK RAAGSGYWKP ISKSRQIIAS LSNYVIGVRT TLIFHQGNKH  120
SNNYYDSKTQ WVMHEYRLVG SGTIPNTKQV SKMKLGDWVV YRVFQRKRRP KKERIVISKP  180
SSSSKLQTTM EERSDIVGPS QPCSPCCSGV TTDEGGLDQE ETNSSSEGHN FCSPPRVLFI  240
YTGKIFNTYE SCDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-27816713169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165172RKRRPKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753381e-156KC775338.1 Jatropha curcas NAC transcription factor 060 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067307.11e-167NAC domain-containing protein 83
TrEMBLR4NEW41e-166R4NEW4_JATCU; NAC transcription factor 060
STRINGcassava4.1_031758m1e-103(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-46NAC domain containing protein 83