PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02077.20

Common Name

JCGZ_05712, LOC105628270

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 138aa MW: 15333.8 Da PI: 9.5145

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02077.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16	2.3e-05	33	72	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ +++ L++l+ + +K + a++L +A+eYI+ L Jcr4S02077.20 33 KERKEKLGERIVALQQLVSPY-----GKTDTASVLLEAMEYIRFL 72 6778889999999**9999.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.4E-10	22	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.636	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-12	29	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-4	29	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.18E-5	33	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MMENKRSPCS VDQGSLTSIA TKRHKADLSI STKERKEKLG ERIVALQQLV SPYGKTDTAS 60 VLLEAMEYIR FLHEQVKVLS APYLQVTPAQ LQELEQYSLR SRGLCLVPIS CTLGVARSNG 120 ADLWAPIKTT SPKFEKAI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065056.1	2e-98	transcription factor bHLH113 isoform X1
Swissprot	Q7XJU2	1e-64	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A067LI45	4e-97	A0A067LI45_JATCU; Uncharacterized protein
STRING	cassava4.1_018752m	3e-88	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10813	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	5e-67	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105628270

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]