PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02103.20

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 256aa MW: 30108.8 Da PI: 7.5635

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02103.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.3	2.7e-20	31	98	15	86
trihelix 15 remeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 e+e+++ +k++k+lWe vs+kmrerg++r+p qCk+kw+nl +ryk ++++ ++ +cp+f++l+ Jcr4S02103.20 31 GELEKDFTIAKRNKALWEIVSAKMRERGYRRTPDQCKCKWKNLVNRYKGKETSDPEN----GLHCPFFKELH 98 688999*****************************************99999974....457****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	5.66E-19	20	81	No hit	No description
Pfam	PF13837	9.7E-18	34	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MHIPSGRGGL TAATATVDGT RDEGLDLGFE GELEKDFTIA KRNKALWEIV SAKMRERGYR 60 RTPDQCKCKW KNLVNRYKGK ETSDPENGLH CPFFKELHTV FNERAKNMQR LLFESEAGST 120 QAKKRAKRMS VDRSLNELSE DEDEDENGSG GEERLARTNS RKRKGERILT DMSSRVTITS 180 NPDIGSIHEM LKEFFQWQQQ MELQWREMME RRAHEQQLFE QEWRQSMEKI ERERLMIEQA 240 FRVEGRTEAD KRREQS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070490.1	1e-149	trihelix transcription factor GT-3b
TrEMBL	A0A067KU78	1e-148	A0A067KU78_JATCU; Uncharacterized protein
STRING	cassava4.1_029909m	2e-95	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	3e-23	Trihelix family protein