PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02115.70

Common Name

JCGZ_07671, LOC105638149

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GATA

Protein Properties

Length: 204aa MW: 22235.2 Da PI: 10.3616

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02115.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.2	2.6e-19	64	97	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk + Jcr4S02115.70 64 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 97 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	4.8E-19	58	109	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.37E-13	58	99	No hit	No description
PROSITE profile	PS50114	12.967	58	94	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	8.9E-16	62	97	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	8.16E-13	63	95	No hit	No description
Pfam	PF00320	4.3E-17	64	97	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	64	89	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MYRKANKLIS CKREDNIIGD YYDGNGGGGG EGSSSITKWL PSKFQDQQCH AKSHNTNTTT 60 IRVCSDCNTT TTPLWRSGPR GPKSLCNACG IRQRKARRAM AAAAMANGTV AATETLSSSS 120 SSSTKTNYKL QYNKDKKLRT AGHVTQGKKL SKPPDPPHQT QRKLCLKNLA LSLSNNSALQ 180 RIFPQDVQEA AILLMELSCG FIHS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077289.1	1e-149	GATA transcription factor 21 isoform X2
TrEMBL	A0A067KP86	1e-113	A0A067KP86_JATCU; Uncharacterized protein
STRING	cassava4.1_031585m	7e-62	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1992	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56860.1	8e-20	GATA family protein

Link Out ? help Back to Top
Entrez Gene	105638149

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]