PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02139.50

Common Name

JCGZ_13051, LOC105638778

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C3H

Protein Properties

Length: 308aa MW: 34341.4 Da PI: 7.8364

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02139.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	50.2	4e-16	242	267	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd+C+FaHg Jcr4S02139.50 242 WKTELCNKWQETGACPYGDNCQFAHG 267 8************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.22E-11	238	273	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.8E-19	238	274	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.145	241	269	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-9	241	268	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-13	242	267	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-7	275	305	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.72E-5	276	306	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.07	279	307	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.99	279	306	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0051511	Biological Process	negative regulation of unidimensional cell growth
GO:1901347	Biological Process	negative regulation of secondary cell wall biogenesis
GO:0003729	Molecular Function	mRNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MEKRASPPLD QITVSPASKS PPLPSSPPSD NRTQQFASTF TTLYHSIFPP KPSPLPSSLS 60 FSITPSTSSP SSAATTDDFD IEHQLHQARL ILEYQELCDH YELSLDRLQA LTTEIESLRQ 120 ENTNLRLANN DLVKLLSLSS QAAIQSRFNS REMVEPSRFE RRNGERVTLP KSISVRSSGY 180 LKLNRADNAS NGDQSSTSTR SRVASHHDQF VSGLVQQRVC VPGGGKGDNP AVELEVFNQG 240 MWKTELCNKW QETGACPYGD NCQFAHGIKE LRPVIRHPRY KTQVCRMVVA GQACPYGHRE 300 VFLHSDMN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1rgo_A	1e-18	242	305	4	67	Butyrate response factor 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012078032.1	0.0	zinc finger CCCH domain-containing protein 14
Swissprot	Q9C9N3	3e-79	C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBL	A0A067KL69	0.0	A0A067KL69_JATCU; Uncharacterized protein
STRING	cassava4.1_032507m	1e-142	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2778	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	3e-76	C3H family protein

Link Out ? help Back to Top
Entrez Gene	105638778

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]