PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02139.60

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NF-YC

Protein Properties

Length: 218aa MW: 25363.7 Da PI: 6.2611

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02139.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	140.3	5e-44	61	163	2	100
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 l fw++q i++++ k +h+lPlarik+i+k+d +vkmisa++P+l+skacelfileltlr+wl++ee+krrtl+++dia a+ + d dflv Jcr4S02139.60 61 LDFFWNQQlleIQTTSACKtHHQLPLARIKRIMKSDGEVKMISADTPILFSKACELFILELTLRAWLQTEECKRRTLQRCDIARAIRHDDALDFLV 156 678***97777888888799********************************************************************** PP NF-YC 94 divprde 100 d+vp+d+ Jcr4S02139.60 157 DVVPHDH 163 **985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.63E-28	79	172	IPR009072	Histone-fold
Pfam	PF00808	9.5E-18	83	146	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	7.2E-33	84	160	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MDLNQSTEFN PSSNTNSPPP IHHFMPISNN FMFPNYHYQP TKQDCQEARH SRFMQMQKQN 60 LDFFWNQQLL EIQTTSACKT HHQLPLARIK RIMKSDGEVK MISADTPILF SKACELFILE 120 LTLRAWLQTE ECKRRTLQRC DIARAIRHDD ALDFLVDVVP HDHDHDHGHP NKVELHVGVY 180 RSVDGHWVTG YDADVGSCDA VEAELWGLYD GFKIGMEW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-33	68	161	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012078033.1	1e-128	nuclear transcription factor Y subunit C-2 isoform X1
Swissprot	Q8LCG7	1e-38	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A067K9V0	1e-100	A0A067K9V0_JATCU; Uncharacterized protein
STRING	XP_010108900.1	1e-72	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14399	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-36	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]