PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02165.50

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 204aa MW: 23668 Da PI: 9.4228

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02165.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.4	1.3e-32	39	93	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFve+v++LGG+ekAtPk il++m v+gLt+ hvkSHLQkYR+ Jcr4S02165.50 39 KTRIRWTKDLHKRFVECVNHLGGAEKATPKLILKMMAVEGLTIFHVKSHLQKYRM 93 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-18	37	93	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-29	38	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-24	39	93	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-8	43	92	IPR001005	SANT/Myb domain
Pfam	PF14379	8.5E-20	121	168	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MLETTMPKQQ ERLNFPGKQL KQQQSVYLVA SGSANIARKT RIRWTKDLHK RFVECVNHLG 60 GAEKATPKLI LKMMAVEGLT IFHVKSHLQK YRMCRYIPES TEGKSERNST NDISIDQKTG 120 MQIAETLKLQ LVVQRRLHEQ LEIQRNLQLR IEEQGRQLKN MLDQQRKTNN TDLSETTNSD 180 FTFQEDIPSN GLHSSPVEEL EDSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	39	96	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	39	96	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	39	96	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	39	96	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	39	96	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	39	96	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	39	96	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	39	96	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012092628.1	1e-135	myb family transcription factor PHL5
Swissprot	Q0WVU3	5e-60	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A067J9G2	1e-135	A0A067J9G2_JATCU; Uncharacterized protein
STRING	EMJ04098	2e-70	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-62	G2-like family protein