PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02212.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARR-B
Protein Properties Length: 204aa    MW: 23201 Da    PI: 5.7303
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02212.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like23.99.4e-08181202122
        G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                    k+r++W+ +LH++Fv+av q+G
  Jcr4S02212.10 181 KARVVWSADLHRKFVQAVCQIG 202
                    68*****************996 PP
2Response_reg88.51.8e-29201281109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+vdD+p+ +++l+++l+k  y +v+++  +++al+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge++ + + ++ Ga
  Jcr4S02212.10  20 VLVVDDDPTWLKILEKMLKKCSY-DVTTCGLARDALNLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGEKSKLMKGIQHGA 113
                    89*********************.***************999999**********************6644.8*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                    +d+l Kp+ +e+l++
  Jcr4S02212.10 114 SDYLLKPIRMEQLRN 128
                    ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.4E-4317141No hitNo description
SuperFamilySSF521725.41E-3517134IPR011006CheY-like superfamily
SMARTSM004481.5E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.06319134IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.5E-2620128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.83E-2821134No hitNo description
Gene3DG3DSA:1.10.10.603.8E-6180203IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MMESGFSSPR HDAFPAGLRV LVVDDDPTWL KILEKMLKKC SYDVTTCGLA RDALNLLRER  60
KDGYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG EKSKLMKGIQ HGASDYLLKP  120
IRMEQLRNLW QYVLLTEKLD KVRDIEIVAG MESIQMTRNG EDLSTSAKKR RDPGDISFIE  180
KARVVWSADL HRKFVQAVCQ IGLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ab5_A9e-17181422119CHEY
1ab5_B9e-17181422119CHEY
1ab6_A7e-17181422119CHEMOTAXIS PROTEIN CHEY
1ab6_B7e-17181422119CHEMOTAXIS PROTEIN CHEY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085580.11e-111two-component response regulator ARR11
SwissprotQ5N6V82e-83ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A061E8U61e-106A0A061E8U6_THECC; Two-component response regulator
TrEMBLA0A2C9UNZ61e-106A0A2C9UNZ6_MANES; Two-component response regulator
STRINGcassava4.1_004317m1e-107(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1592633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.14e-85response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]