PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02212.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARR-B
Protein Properties Length: 368aa    MW: 41421.7 Da    PI: 6.8062
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02212.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.25.8e-21151204155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r++W+ +LH++Fv+av q+ G +k  P++il+lm+v+ Lt+ehv+ HL kYR+
  Jcr4S02212.20 151 KARVVWSADLHRKFVQAVCQI-GLDKIGPQKILDLMDVPWLTREHVATHLRKYRV 204
                    68*******************.********************************7 PP
2Response_reg57.76.9e-20279837109
                    HHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
   Response_reg  37 ellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                    +++++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge++ + + ++ Ga+d+l Kp+ +e+l++
  Jcr4S02212.20  27 AIWRKDGYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGEKSKLMKGIQHGASDYLLKPIRMEQLRN 98 
                    5788999**********************6644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011025.8951104IPR001789Signal transduction response regulator, receiver domain
SMARTSM004484.3E-91100IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.73E-2016104No hitNo description
SuperFamilySSF521728.97E-2125104IPR011006CheY-like superfamily
PfamPF000721.5E-162798IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.7E-2527120No hitNo description
SuperFamilySSF466895.2E-15149208IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-22150209IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17151203IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVENSFSHGR NNALPAGLRV LVVHADAIWR KDGYDIVISD VNMPDMDGFK LLEHVGLEMD  60
LPVIMMSVDG EKSKLMKGIQ HGASDYLLKP IRMEQLRNLW QYVLLTEKLD KVRDIEIVAG  120
MESIQMTRNG EDLSTSAKKR RDPGDISFIE KARVVWSADL HRKFVQAVCQ IGLDKIGPQK  180
ILDLMDVPWL TREHVATHLR KYRVYFNRLQ KENYLRTSVG GIKHSDSAWK VSTGSFSTQN  240
SINMQQSYAY ASNNSNGFPG QPRFKYNFPP SNSSESVGSN KLRKDFWYDS LLLYNVETRG  300
YESDEEEIVS LPVGPSTISS STDLSDASMS SNSWNSQTGF SNSSTSSGSD VNNMAAFDST  360
FLFHSIKT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085580.11e-122two-component response regulator ARR11
SwissprotQ5N6V82e-78ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A067JSA11e-118A0A067JSA1_JATCU; Two-component response regulator
STRINGcassava4.1_004317m1e-116(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.17e-79response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]