PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02217.10

Common Name

JCGZ_19423

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GATA

Protein Properties

Length: 219aa MW: 22795.3 Da PI: 10.3302

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02217.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	23.1	1e-07	190	211	1	20
GATA 1 Cs..nCgttkTplWRrgpdgnk 20 C+ nC+t +Tp+WR+gp g+k Jcr4S02217.10 190 CTncNCNTNDTPMWRKGPLGPK 211 7744677777**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	3.8E-4	186	209	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MMMGGGRAAT NNYGMGGGNY GMRGGGAAAN NYGMEGGNYG MRGGGAGTNN YGIRGGNYGM 60 TGGRLATNNY EMGGGRAAIN NYGIGGGGVV TNNYGIGEGG AAINHYGMIN RTGNAASTSG 120 ILRHYQQYAT GIPAYQNING GLTLPPFQPH SLTSYTLLDY SPFKPHQTGK PSSVARRPRN 180 GNNVNPHRRC TNCNCNTNDT PMWRKGPLGP KEGKAGRKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012093241.1	5e-89	GATA zinc finger domain-containing protein 7
Refseq	XP_012093243.1	5e-89	GATA zinc finger domain-containing protein 7
TrEMBL	A0A067LB01	1e-147	A0A067LB01_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13778	16	22

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]