PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02266.20
Common NameJCGZ_06869, LOC105650420
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 382aa    MW: 42787.1 Da    PI: 8.4251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02266.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36e-5381431128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeel+ +yLkkk+++ ++++ ++i++vdiyk++PwdLp k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk ++++ 
  Jcr4S02266.20   8 LPPGFRFHPTDEELILHYLKKKISSAPFPV-SIIADVDIYKFDPWDLPDKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIVASs 102
                    79****************************.89***************888889***************************************999 PP

            NAM  96 ........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +++++g+kk Lvfykgr pkg kt+W+mheyrl
  Jcr4S02266.20 103 iagssigvQENNIGVKKALVFYKGRPPKGIKTNWIMHEYRL 143
                    998888888888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-635179IPR003441NAC domain
PROSITE profilePS5100560.5218179IPR003441NAC domain
PfamPF023651.2E-279143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MKNPQSNLPP GFRFHPTDEE LILHYLKKKI SSAPFPVSII ADVDIYKFDP WDLPDKAAFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKLIVA SSIAGSSIGV QENNIGVKKA  120
LVFYKGRPPK GIKTNWIMHE YRLSDTPTHS TIRPINRPKD SSTTTMRLDD WVLCRIYKKT  180
HASPPPAVAA ATTSDQDQED EEEEFVQETL SPSLKNPIIS NKPLMPQKSV SFSNLLDAMD  240
YSMLSSFLSD NQFNPSGYDS TPTLFNNATS SDPFFNNYNP PTANGSGSGG GGGSSSNRFL  300
LQKLPQLNGP LMPNMENKLK RPISTVDQED MHNPSKKIIN SCCFTNSSNQ TDHMPHHHQY  360
NFLNQPFLNQ QLILSPHLQF QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-70518317172NAC domain-containing protein 19
3swm_B3e-70518317172NAC domain-containing protein 19
3swm_C3e-70518317172NAC domain-containing protein 19
3swm_D3e-70518317172NAC domain-containing protein 19
3swp_A3e-70518317172NAC domain-containing protein 19
3swp_B3e-70518317172NAC domain-containing protein 19
3swp_C3e-70518317172NAC domain-containing protein 19
3swp_D3e-70518317172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4544640.0KM454464.1 Jatropha curcas NAC047 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306860.10.0NAC transcription factor 29
SwissprotQ84TD61e-119NAC47_ARATH; NAC transcription factor 47
TrEMBLR4N5K70.0R4N5K7_JATCU; NAC transcription factor 026
STRINGXP_002525467.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-110NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  4. Ni J, et al.
    Gibberellin Promotes Shoot Branching in the Perennial Woody Plant Jatropha curcas.
    Plant Cell Physiol., 2015. 56(8): p. 1655-66
    [PMID:26076970]
  5. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]