PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02287.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 232aa    MW: 26134.9 Da    PI: 4.9608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02287.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08178203630
                    HHHHHHHHHHHHHHHHHHHCTSCC.C CS
            HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                     ++ErrRR+r+N++++ Lr+++Pk +
  Jcr4S02287.10 178 LMAERRRRKRLNDRLSMLRSIVPKiS 203
                    589********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.515172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-7175205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-6178203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-6179203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MELSQHGFLE ELLNQGQRRD SWANFSNGSN ELFFSSSSSN SGWNFDSFDD NTNLSTPNPS  60
FLGFSTPFDC PSFSDQSNYP FLDGFTTLPT EINDNDNTAP TPTPPPFTIQ DQDYPSIVEN  120
DLLRDQIGFE ERLSSCCKVE MEQAAASNNN VHQIFTMGSN AEKKNKSKKL EGQPSKNLMA  180
ERRRRKRLND RLSMLRSIVP KISKPAEQRT LLAPEDIKQA LFRTAGYGGR CL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180187ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079522.11e-148transcription factor bHLH93
TrEMBLA0A067KK151e-146A0A067KK15_JATCU; Uncharacterized protein
STRINGXP_002528891.19e-63(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.24e-14beta HLH protein 93