PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02314.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 1173aa    MW: 131577 Da    PI: 6.7935
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02314.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.8e-23146247199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++ 
  Jcr4S02314.10 146 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEKS 238
                    99*****************************9445444.38************************************************..45677 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l+++++r+
  Jcr4S02314.10 239 QLLLGIRRA 247
                    789999997 PP
2Auxin_resp122.92.2e-40272354183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+++s+F v+YnPras++eFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdldpvrW+nS+Wr+L+
  Jcr4S02314.10 272 AAHAAANNSPFAVFYNPRASPAEFVIPFSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 354
                    79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-44136275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-42138261IPR015300DNA-binding pseudobarrel domain
CDDcd100174.25E-20145246No hitNo description
PROSITE profilePS5086312.365146248IPR003340B3 DNA binding domain
SMARTSM010195.3E-24146248IPR003340B3 DNA binding domain
PfamPF023623.5E-21146247IPR003340B3 DNA binding domain
PfamPF065072.0E-35272354IPR010525Auxin response factor
PfamPF023097.1E-1010231112IPR033389AUX/IAA domain
PROSITE profilePS5174526.19210261119IPR000270PB1 domain
SuperFamilySSF542771.03E-810421104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1173 aa     Download sequence    Send to blast
MTNKQMEMDI RWKILFSNFM NCGFFSILMI FWIGSRTGER KSINSELWHA CAGPLVSLPP  60
VGSLVVYFPQ GHSEQVAASM QKETDFIPSY PNLPSKLICM LHNVTLHADA ETDEVYAQMT  120
LQPYDKEALL ASDMGLKQSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ  180
PPAQELVARD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL  240
LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFAVFYNPRA SPAEFVIPFS  300
KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES  360
TAGERPSRVS IWEIEPVVTP FYICPPPFFR PKFPRQPGMP DDESDIENAF KRAMPWLGDD  420
FGMKDSPSSI FPGLSLVQWM SMQQNNQFPA AQAGFFPPML PSNALHNSLG SDDPSKILNF  480
QAPGLSVPSL QFNKANPQNQ VSQLPQTSMA WTQQQQLQQL LQSNVNQQQP SNPQQQQQQP  540
HPQQQQQRQQ PQPTQQQLNQ QQQPQPQPQP QPQPQPQPQP QSQQIRQQPP QLQLQQQQQI  600
FQSPPVNNGV VTSNQIPNQN LQQPIVYSQL QQQQLLASNN QSQNIPSANK NSYPLTSLPQ  660
DPQFQQQMEQ QSNLLQRHQQ QTQLQQSPLQ LLQQNLSQRA QPQSQSQPQA QQLSQPGLSD  720
QQLHLQLLQK LQQQQQQQQQ QQLLSPSSSP LQPQLIQQQT HQQNLQFQQS TISQSQQQPL  780
GSNSFSTAAL MQSQSFPVSQ HHALQKSPTI RAHSTLTDGD APSCSTSPST NNCQIAPSNF  840
LNRNQQAPAI LMGDSVIEPA TNLVQELNNK SDIRVKHEFP GSKASDQLKY KGTITDQLEA  900
SSSGTSYCLD AGNIQQNFSL PTFGLDGDVQ SHPRNSLPFA TNIESLAPDT LLTRGYDSQK  960
DLQNLLANYG GTPRDIETEL STAAISSQSF GVPIMPFKPG CSNDVAINDS GVLNGGLWAN  1020
QTQRMRTYTK VQKRGSVGRS IDVTRYKGYD ELRHDLARMF GIEGQLEDPQ SSDWKLVYVD  1080
HENDILLVGD DPWEEFVSCV QSIKILSSAE VQQMSLDGDL GTTTAWHLST QVKTADPSLR  1140
NTSTGEKVVA QRWHQSCVIS KSSVLLEFEL FVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1723737544388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077094.10.0auxin response factor 19 isoform X2
TrEMBLG7JS690.0G7JS69_MEDTR; Auxin response factor
STRINGAES921670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19