PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02344.60

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

TCP

Protein Properties

Length: 190aa MW: 20867.8 Da PI: 8.3437

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02344.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.6	6.8e-32	36	106	6	73
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec 73 ++ +++h+kv+gRdRR+Rl+a caar+F+L++eLG +d++tieWLl++a+p+i+++tgt+ s+ s+c Jcr4S02344.60 36 KQRKDRHSKVNGRDRRIRLPAVCAARIFQLTRELGNRTDGETIEWLLKMAEPSIIAATGTGISATvetSSC 106 6789********************************************************66555222333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.9E-28	37	108	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.599	38	92	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MGRIIEVITP PTLSPSNKKP KSISPKTSKT KLINAKQRKD RHSKVNGRDR RIRLPAVCAA 60 RIFQLTRELG NRTDGETIEW LLKMAEPSII AATGTGISAT VETSSCASNG FISPFSNGLQ 120 QMGSLDFSGS TGHFMDNNTN ISCVGEIEGL TTKNCEFPKP EQAFLPSFEF DHFVANFDME 180 LPVNDMSFPL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012064757.1	1e-102	transcription factor TCP15
Swissprot	Q9FTA2	3e-29	TCP21_ARATH; Transcription factor TCP21
TrEMBL	A0A067L6F4	1e-100	A0A067L6F4_JATCU; Uncharacterized protein
STRING	XP_002529440.1	1e-58	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	5e-31	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]