PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02347.10

Common Name

JCGZ_26190

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 230aa MW: 25497.5 Da PI: 5.0871

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02347.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.4e-12	54	111	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAveYIksLq 55 +e+Er+RR+++ + + Lr+llP++s ++ ++K s ++ + +A +YIk+L+ Jcr4S02347.10 54 VRKEIERQRRQQMSTLQASLRSLLPHQSlqgfvdGGMQGKRSMSDHVNEAAKYIKHLE 111 5689********************888*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-11	49	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.96E-7	50	115	No hit	No description
PROSITE profile	PS50888	11.744	50	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-9	53	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-9	55	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0047	56	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
ISSNYPNQDI VNPLILDYQF TSLGTSNYLM EDGLQQPSIT LPSSNPNNDK KKIVRKEIER 60 QRRQQMSTLQ ASLRSLLPHQ SLQGFVDGGM QGKRSMSDHV NEAAKYIKHL ESNVQELSAK 120 RDKLKNLTCV GDQEEGNQST VVHNNSTNAT VSVWSHVGGV EVVISSDSGE ETFLLSTVLE 180 ALLEEGFDIV CCISTNTDGR LYSTIQCQAS HETCIDPTTL QQKLNDVILK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020540654.1	1e-170	transcription factor bHLH126 isoform X1
TrEMBL	A0A067JS42	1e-159	A0A067JS42_JATCU; Uncharacterized protein
STRING	XP_002510878.1	4e-81	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	3e-36	bHLH family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]