PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02357.70

Common Name

JCGZ_23074

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 434aa MW: 47689.6 Da PI: 8.0217

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02357.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H Jcr4S02357.70 57 YICEVCHKGFQRDQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	13.3	0.00025	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Jcr4S02357.70 133 WKCDKCSKRYAVQSDWKAHAKIC 155 58*****************9987 PP
3	zf-C2H2	11.1	0.0012	163	181	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + Jcr4S02357.70 163 DCGTIFSRKDSFVTHRAFC 181 8**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.1E-5	56	79	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.94E-6	56	79	No hit	No description
PROSITE profile	PS50157	10.741	57	79	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.038	57	79	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.0E-4	121	154	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.94E-6	128	153	No hit	No description
SMART	SM00355	140	133	153	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MSNFAQEFED DEQFQSTILA HSSNVSPNPT EIVVDGSYPD AEVVALSPRT LMATNRYICE 60 VCHKGFQRDQ NLQLHRRGHN LPWKLKQRAS TQVKKRVYIC PEPKCVHHDP TRALGDLTGI 120 KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HAKICGTREY RCDCGTIFSR KDSFVTHRAF 180 CDALAEENYK ANQNLATARG MLQSQAEELF TSSIPSLDSC SKKSSVMNMT ISDENVDTSL 240 GPLSLNSSGI MMSSNFPILN TRTSNVSPMA IGSASVYASA TALLQKAAEM GTKISDNSIA 300 PILLRGFAGY TSSGSAQEGS LVIGSNIGPT TGNMNSLSMG ETQTSDKNLD PGYPRNVYAI 360 SQTGLLESTL NMPPENGNAA DNLGEFYMGT SQKMTLDFLG VEPSTGKKRS YQGNIVGLGY 420 SNIHQNFNNL HSEW

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MSNFAQEFED DEQFQSTILA HSSNVSPNPT EIVVDGSYPD AEVVALSPRT LMATNRYICE  60
VCHKGFQRDQ NLQLHRRGHN LPWKLKQRAS TQVKKRVYIC PEPKCVHHDP TRALGDLTGI  120
KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HAKICGTREY RCDCGTIFSR KDSFVTHRAF  180
CDALAEENYK ANQNLATARG MLQSQAEELF TSSIPSLDSC SKKSSVMNMT ISDENVDTSL  240
GPLSLNSSGI MMSSNFPILN TRTSNVSPMA IGSASVYASA TALLQKAAEM GTKISDNSIA  300
PILLRGFAGY TSSGSAQEGS LVIGSNIGPT TGNMNSLSMG ETQTSDKNLD PGYPRNVYAI  360
SQTGLLESTL NMPPENGNAA DNLGEFYMGT SQKMTLDFLG VEPSTGKKRS YQGNIVGLGY  420
SNIHQNFNNL HSEW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	129	187	3	61	Zinc finger protein JACKDAW
5b3h_F	1e-33	129	187	3	61	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012089417.2	0.0	protein indeterminate-domain 2
Swissprot	Q9SCQ6	1e-102	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A067JH63	0.0	A0A067JH63_JATCU; Uncharacterized protein
STRING	cassava4.1_024252m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17040	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-104	indeterminate(ID)-domain 2

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]