PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02405.40

Common Name

JCGZ_08042, LOC105635184

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 368aa MW: 41828.4 Da PI: 5.7925

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02405.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.2	3.1e-53	21	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeel+++yL+ kv + + i+evd++++ePw+Lp +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ Jcr4S02405.40 21 LPPGFRFHPTDEELITFYLASKVFNGAFCG-VEIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAs 115 79***********************777.45***********8888899**********************************987 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+l g+kktLvfykgrap+gekt+Wvmheyrl Jcr4S02405.40 116 TGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148 8889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-63	16	171	IPR003441	NAC domain
PROSITE profile	PS51005	59.837	21	170	IPR003441	NAC domain
Pfam	PF02365	8.8E-28	22	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MLSMEELLCE LIGEDKNEQG LPPGFRFHPT DEELITFYLA SKVFNGAFCG VEIAEVDLNR 60 CEPWELPDVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASTGALL 120 GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSYRHTCKE EWVICRIFHK NGEKKNGILQ 180 AQGFLLEANS PPTFSSLPSL LEAPLLLECE TQTPFLIKQD SQSNKHTVSF GTSSPITIST 240 DAETNKNIQD NPSAPMLFKS LLSHPLKEQF TIPKQCKTEP NFSHFQLPAG ADHANLFNYW 300 VEKIHHPNTY HCPLSFEMDC NVLGISTEFD SDITANDLST SIAFNRADFQ MMLDTPIRLP 360 AQSWPLDS

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MLSMEELLCE LIGEDKNEQG LPPGFRFHPT DEELITFYLA SKVFNGAFCG VEIAEVDLNR  60
CEPWELPDVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASTGALL  120
GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSYRHTCKE EWVICRIFHK NGEKKNGILQ  180
AQGFLLEANS PPTFSSLPSL LEAPLLLECE TQTPFLIKQD SQSNKHTVSF GTSSPITIST  240
DAETNKNIQD NPSAPMLFKS LLSHPLKEQF TIPKQCKTEP NFSHFQLPAG ADHANLFNYW  300
VEKIHHPNTY HCPLSFEMDC NVLGISTEFD SDITANDLST SIAFNRADFQ MMLDTPIRLP  360
AQSWPLDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	21	171	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	21	171	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	21	171	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	21	171	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	21	171	20	169	NAC domain-containing protein 19
3swm_B	1e-50	21	171	20	169	NAC domain-containing protein 19
3swm_C	1e-50	21	171	20	169	NAC domain-containing protein 19
3swm_D	1e-50	21	171	20	169	NAC domain-containing protein 19
3swp_A	1e-50	21	171	20	169	NAC domain-containing protein 19
3swp_B	1e-50	21	171	20	169	NAC domain-containing protein 19
3swp_C	1e-50	21	171	20	169	NAC domain-containing protein 19
3swp_D	1e-50	21	171	20	169	NAC domain-containing protein 19
4dul_A	1e-50	21	171	17	166	NAC domain-containing protein 19
4dul_B	1e-50	21	171	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775285	0.0	KC775285.1 Jatropha curcas NAC transcription factor 007 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020535452.1	0.0	protein CUP-SHAPED COTYLEDON 3 isoform X2
Swissprot	Q9S851	1e-105	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	R4N7J5	0.0	R4N7J5_JATCU; NAC transcription factor 007
STRING	XP_002510719.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7888	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-107	NAC family protein

Link Out ? help Back to Top
Entrez Gene	105635184

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]