PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02420.20

Common Name

JCGZ_19651, LOC105643842

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C3H

Protein Properties

Length: 283aa MW: 29945.4 Da PI: 9.5118

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02420.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.6	8.7e-08	259	282	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 +++ C++++++G+Ck G+ C + H Jcr4S02420.20 259 GQRVCKYYHENGHCKKGAACDYLH 282 6899*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.45	257	283	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-5	257	282	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.7E-5	259	282	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-5	261	282	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MSTQPSGYGN WGDTQTFVHN SASSFIAGNT GTMPSDLWRG PIPAQPNIQP SAASNVPWGM 60 SVTDNQTTTP RQGPENQNTG WGPIPGNSNM GWGGPVHANS NQGWVASGQA PPANANPGWV 120 AHGQGQAPGN ANPGWVAPVQ GQAAGNAFPA WMPPGQGPTP VNANQTWVAP GQGQPPGNAN 180 PNWAAASVNM GSWGSEQNQN GERFSSQRNT SQGGDSGYGG GKPWNKQSSF GRERDSPRPR 240 ERDSSRHKER ESSRPPFKGQ RVCKYYHENG HCKKGAACDY LHT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084452.1	0.0	zinc finger CCCH domain-containing protein 19 isoform X1
TrEMBL	A0A067JUK4	0.0	A0A067JUK4_JATCU; Uncharacterized protein
STRING	cassava4.1_034204m	1e-101	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1435	15	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	3e-15	nucleic acid binding;zinc ion binding;DNA binding

Link Out ? help Back to Top
Entrez Gene	105643842

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]