PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02431.30

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 845aa MW: 97722.6 Da PI: 7.175

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02431.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.5e-17	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y+eYA GF v k + +k ng tf C + k+ ++ + ++r+r++ r+gCka+l ++++dg+w+++k+ leHnHe+ap Jcr4S02431.30 51 DYYQEYAMAKGFCVNKLSGRKD-VNGDYQFITFGCHRGRKAGTNINI---KERQRPSRRIGCKARLCASNQRDGRWKINKVILEHNHEMAP 137 59***********9998887.8888******9999998877...9999********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-15	51	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-29	257	349	IPR018289	MULE transposase domain
Pfam	PF04434	3.5E-4	529	576	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.495	541	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.6E-8	554	581	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence Send to blast
MTSMMEECSD IDVTQRNGIE STIEDTGNNC GNSQNEPQVG MLFKEMEEVF DYYQEYAMAK 60 GFCVNKLSGR KDVNGDYQFI TFGCHRGRKA GTNINIKERQ RPSRRIGCKA RLCASNQRDG 120 RWKINKVILE HNHEMAPSKS KFLLQQRALL PHEKRRLEVN DSVDARSCKT FRSLVAEVEG 180 PEMISCSEGD CHSHLGKVGK LHLAKGDVEA VYQLFRRMQQ RDRNFFYEIA VDKTGRMKNV 240 FWADGRCQYA YKEFGDVISL DTMYLVNEYK MPFASFVGIN HHGQPILLGC ALICNEKVST 300 FVWVFRQLLR CMGNVAPPAI ITDQCASISK AIEIVFPETR HRWCLRYIML KFSEKMKQYN 360 QYSEIKEFFT NLVFDSVSID EFEKGWEMML DWFNLHEHSW LIDLYEGKEK WVPIYVRRYF 420 WGGLSLTQRN ESMNSFFDGY IHSRSTLKQF LDQYEVALMN KIEKEMQADF DSMNSKIPTC 480 SEYAIEKQFQ EAYTHGIYVQ VRKEFLKMMY CSVSLVGERQ NVLRYSIDYK VFLDGGGWKR 540 VNHDVIYNHD LVDVSCSCML FESKGILCSH ALCVLTKHDV DVLPNRYILN RWRKDLKRYY 600 SIIKSSLFGP QLSEEAKRVK EMEEIFTKAV DIVYGKDEMC SYVYNSLREL LTKLESWEMG 660 GSRNNNDIFV GECSVAERGD KSCVNDDAVV YNNPQTTKSR GRPRTKCVAS QAEKNTQTVA 720 NKGDNVSIAV ESPNFPAGAL SSVGTTPMPD VRVEIVDLLR SMDSPDGNRE HDRWVVSVIH 780 EYQVALLDYG PLIPGEWEHK SAEEWHCLFD IFGVYIVHPY FTGRLMNIKI MHSAKGGSPD 840 DIKRR

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence Send to blast

MTSMMEECSD IDVTQRNGIE STIEDTGNNC GNSQNEPQVG MLFKEMEEVF DYYQEYAMAK  60
GFCVNKLSGR KDVNGDYQFI TFGCHRGRKA GTNINIKERQ RPSRRIGCKA RLCASNQRDG  120
RWKINKVILE HNHEMAPSKS KFLLQQRALL PHEKRRLEVN DSVDARSCKT FRSLVAEVEG  180
PEMISCSEGD CHSHLGKVGK LHLAKGDVEA VYQLFRRMQQ RDRNFFYEIA VDKTGRMKNV  240
FWADGRCQYA YKEFGDVISL DTMYLVNEYK MPFASFVGIN HHGQPILLGC ALICNEKVST  300
FVWVFRQLLR CMGNVAPPAI ITDQCASISK AIEIVFPETR HRWCLRYIML KFSEKMKQYN  360
QYSEIKEFFT NLVFDSVSID EFEKGWEMML DWFNLHEHSW LIDLYEGKEK WVPIYVRRYF  420
WGGLSLTQRN ESMNSFFDGY IHSRSTLKQF LDQYEVALMN KIEKEMQADF DSMNSKIPTC  480
SEYAIEKQFQ EAYTHGIYVQ VRKEFLKMMY CSVSLVGERQ NVLRYSIDYK VFLDGGGWKR  540
VNHDVIYNHD LVDVSCSCML FESKGILCSH ALCVLTKHDV DVLPNRYILN RWRKDLKRYY  600
SIIKSSLFGP QLSEEAKRVK EMEEIFTKAV DIVYGKDEMC SYVYNSLREL LTKLESWEMG  660
GSRNNNDIFV GECSVAERGD KSCVNDDAVV YNNPQTTKSR GRPRTKCVAS QAEKNTQTVA  720
NKGDNVSIAV ESPNFPAGAL SSVGTTPMPD VRVEIVDLLR SMDSPDGNRE HDRWVVSVIH  780
EYQVALLDYG PLIPGEWEHK SAEEWHCLFD IFGVYIVHPY FTGRLMNIKI MHSAKGGSPD  840
DIKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065290.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_020532726.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A067L9B7	0.0	A0A067L9B7_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-108	FAR1 family protein