PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02476.20

Common Name

JCGZ_20670, LOC105645883

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

ERF

Protein Properties

Length: 227aa MW: 25366.2 Da PI: 5.065

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02476.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	6e-17	59	108	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + + +Wv+e+r+p +k++r++lg++ t+e+Aa+a++ a+++l+g Jcr4S02476.20 59 IFRGVRKRN-NEKWVCELREP---NKKTRIWLGTYPTPEMAARAHDVAALALRG 108 59**888.8*****8...347***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.34E-29	58	118	No hit	No description
Pfam	PF00847	1.4E-12	58	108	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.3E-30	59	118	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.035	59	116	IPR001471	AP2/ERF domain
SMART	SM00380	4.9E-29	59	122	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.16E-20	59	118	IPR016177	DNA-binding domain
PRINTS	PR00367	1.2E-6	60	71	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-6	82	98	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MSSQFSDPYP VLEKQDSDTS TGTASLQRSA HSDEEVLLAT SYPKKRAGRR IFKETRHPIF 60 RGVRKRNNEK WVCELREPNK KTRIWLGTYP TPEMAARAHD VAALALRGKS ACLNFADSSW 120 RLPVPVSKEA QDIRRAAHEA AEMFRSGETE KCGVEYSGEV SSRNSELKQE NDVSYIDEEA 180 VFDMPGLLAN MAEGPLLSPP HYAGGDDGVN WDELEADGEV SLWSFSI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:12376631}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:12376631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087006.1	1e-169	dehydration-responsive element-binding protein 1B
Swissprot	Q9FJ93	8e-66	DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBL	A0A067K136	1e-168	A0A067K136_JATCU; Uncharacterized protein
STRING	XP_002509703.1	1e-108	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF243	33	224

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25470.1	2e-57	C-repeat/DRE binding factor 2

Link Out ? help Back to Top
Entrez Gene	105645883

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Guttikonda SK, et al. Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean. Mol. Biol. Rep., 2014. 41(12): p. 7995-8008 [PMID:25192890] Zhang T, et al. Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana. Plant Physiol. Biochem., 2015. 94: p. 153-64 [PMID:26093308] Carlow CE, et al. Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains. Plant Physiol. Biochem., 2017. 118: p. 306-319 [PMID:28675818] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]