PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02502.40

Common Name

JCGZ_14573, LOC105643169

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 282aa MW: 31217.9 Da PI: 8.0877

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02502.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H +H Jcr4S02502.40 112 FECKACKKVFNSHQALGGHRASH 134 89**************9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.76E-7	111	134	No hit	No description
Pfam	PF13912	8.2E-10	112	136	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	112	134	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.076	112	139	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.76E-7	190	217	No hit	No description
Pfam	PF13912	1.3E-13	194	218	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.44	195	217	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.369	195	217	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	197	217	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MRAHGIVSSP GSDCEDGTPR RGCGWSKRKR SFRAKVGNFS SNCPSSEEED LANCLMMLSN 60 ATVDLSVAEP EESCASASKD EERRNPMNFI APMAYRAPKM DKAKGVANKG MFECKACKKV 120 FNSHQALGGH RASHKKVKGC FAARLDQGPD DSLVDDDVIT HEEFFPAKST STFQFDHGPN 180 HAPLPSTSKR KSKVHECSIC HRVFSSGQAL GGHKRCHWIT SNSQDASSLA KFHQFQDHIE 240 QIQQRPKFIN NPETLDLTLD LNLPAPADDH NRRDQPANPP NF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012083631.1	0.0	zinc finger protein ZAT1
TrEMBL	A0A067JY51	0.0	A0A067JY51_JATCU; Uncharacterized protein
STRING	XP_002511650.1	1e-169	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7511	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	1e-26	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	105643169

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]