PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02513.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 731aa    MW: 81569 Da    PI: 6.2115
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02513.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.5e-15170260186
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                    f+k+lt sd++++g +++ +++a+++       +++    ++l+  d++g++W +++i+r++++r++lt+GW+ Fv++++  +  + ++k ++
  Jcr4S02513.30 170 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKRSVCVSTTLKWIQ 260
                    99****************************964333..4459***********************************9987776666666555 PP
2Auxin_resp68.62e-23314387183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha++t++ F+v+Y+P+  +seF+v+v+k+++a ++k+svGmRfkm+fe+       l  t+vgv d  ++ W +S+WrsLk
  Jcr4S02513.30 314 ASHAIATGTLFSVFYKPS--RSEFIVSVNKYLEARNHKLSVGMRFKMRFEG-------LVVTIVGVGDNISSGWVDSEWRSLK 387
                    789**************8..5****************************98.......6789*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-34159317IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-29167303IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-12168247No hitNo description
PfamPF023623.3E-14170264IPR003340B3 DNA binding domain
SMARTSM010192.0E-9170272IPR003340B3 DNA binding domain
PfamPF065079.0E-22314387IPR010525Auxin response factor
PfamPF023093.5E-12603695IPR033389AUX/IAA domain
PROSITE profilePS5174528.821605698IPR000270PB1 domain
SuperFamilySSF542775.36E-12608682No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MAYTSANHMP VGNLHTVWNS EFAVVVDALM LKSSKYMHFF SSFLESRGCN DALYKELWHA  60
CAGPLVNLPR EGERVYYFPQ GHMEQLEASM HQGLEQHMPS FNLPSKILCK VVNVQRRVGC  120
IMIIAIFASA EPETDEVYAQ VTLLPDPDQN EVTSPDPPLP EPERCTVHSF CKTLTASDTS  180
THGGFSVLRR HADDCLPPLD MSQQPPWQEL VASDLHGNEW HFRHIFRGQP RRHLLTTGWS  240
VFVSSKKRSV CVSTTLKWIQ SDQGRLGWPG PDAQAWGENG ELRVGVRRLM RQQTNMPSSV  300
ISSQSMHLGV LATASHAIAT GTLFSVFYKP SRSEFIVSVN KYLEARNHKL SVGMRFKMRF  360
EGLVVTIVGV GDNISSGWVD SEWRSLKVQW DEPSSILRPD RVSPWELEPL IATTPSNSQP  420
VQRNKRARPS VLPSPTSDLP AFGMWKPPAE SSGFSYGDSQ CGRDLHTSNN FSTVTRANSI  480
GFSGNSPHTG FSPNSMYWPK RVESVTYSFA PAVNKDSGER RQGTGNGYRL FGIQLIDNSN  540
AEETSPLVAA SGMVGDDRPV VSLDAESDQH SEPSNVCRSE IPSVSCEPEK SCLRSPQELQ  600
SRQIRSCTKV HMQGIAVGRA VDLTRFECYE DLLRKLEDMF DIEGELSGST KKWQVVYTDD  660
EDDMMMVGDD PWHEFCSMVR KIFIYTTEEV KRLSPKIKFP VNEEGKAAKA DVDTDGAVTM  720
EDQSSIVGPG C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.05041016355Auxin response factor 1
4ldw_A0.05041016355Auxin response factor 1
4ldw_B0.05041016355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1130351e-115KM113035.1 Populus davidiana x Populus alba var. pyramidalis auxin response factor 1 family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066757.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A067LDD20.0A0A067LDD2_JATCU; Auxin response factor
STRINGcassava4.1_002969m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]