PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02608.20
Common NameJCGZ_25410, LOC105646395
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 878aa    MW: 96916 Da    PI: 8.8298
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02608.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06167188325
                    S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                    t lC++fa+ G C+ G+ C+F H
  Jcr4S02608.20 167 TQLCKDFAA-GRCRKGNHCPFLH 188
                    78*******.************* PP
2zf-CCCH21.54.1e-07290310425
                    ---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                    ++C+ffa+ G C+ G +C+F+H
  Jcr4S02608.20 290 VPCKFFAA-GNCRNGKSCRFSH 310
                    59**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.38164191IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-4164190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5166189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5167188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901223250IPR000571Zinc finger, CCCH-type
SMARTSM003560.024223249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001226248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878286313IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4286312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5289311IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4290310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4291312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MSGSGRRRSS KWDLKEESRI QFESIHDNAW PGKAGLCFHD KESQRGWLSP EAASGNRPKW  60
STLEPLPGRR GSRRDDSIDE DRNRSSKAMT PWDGDDSYGT RMSPGLEEWR QQNHRISPKN  120
EWKRSRRSRS RSRSRSQSRS RSRSPVRGFG RDSGPFDRSR SRSGVSTQLC KDFAAGRCRK  180
GNHCPFLHQG TQSYDDGWER HRKTITPKYP APHDSREYPT GSGRSTDCCT DFLKGNCRRG  240
ASCRFPHHSA SHAVGKGSSN EVIRERNERR HRDASPERRG DREPRRAADV PCKFFAAGNC  300
RNGKSCRFSH QDQTLFSPDR SRDARCSLDH HSDDVEKLWK GPKWGSTSTS DAGKLSRDNK  360
DEAIGAPDER GLARSIDGGW SRWEDKACED PLTDHEKAFP WKAENAGDNM LASDQGAGKN  420
WLGDMDMSPE WNYKVQPSNH IDKQEHASLT SCDPGITLEA SGQVHDVTAV MPMMINESSA  480
KLRDYNLMEV GVSALPHDDK NVTGKAASSH TGISANILPA QSFNQNGLNP NALPLPVLNA  540
VGQGQVKIPI SGGGIVNPLN QSLVQEAKIV TKPDIGETNA SQGDPGLPMT QNMVSSEQLN  600
QLTNISASLA QLLANGQQLP QLYAVHNSHA HNGTEISSFA NSEGAVKSDS AATVQSSQHV  660
GPQKQYDPIS DSFDPKQHDV NNNPPGFSPN LIKQKSIAEA KPEMSCKSLS PSTTGAPNGG  720
DHNKFHNLQE SNGKNHQLNE VETGANSKAK KENDGVETEE SGKAVEVTAE DDGPLENVDG  780
DGKTDEGKKN KDVKGLRAFK FALVEFVKEL LKPTWKEGQM SKDAYKNIVK KVVDKVTGTM  840
QGANVPQTQE KIQQYLSFSK PKLTKLVQAY VEKFQKDK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126134RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087634.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_012087635.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_012087638.10.0zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLA0A067JZ230.0A0A067JZ23_JATCU; Uncharacterized protein
STRINGXP_002527649.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-19C3H family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]