PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02614.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 252aa    MW: 28894.4 Da    PI: 11.0292
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02614.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.6e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Edell ++++++G g W++++++ g++R++k+c++rw++yl
    Jcr4S02614.10 13 KGAWTPVEDELLRNCIQRHGEGKWHKVPSRAGLNRCRKSCRLRWLNYL 60
                     79********************************************97 PP
2Myb_DNA-binding48.42.2e-1566111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r ++T +E +l v+++++lG++ W++Ia +++ gRt++++k++w++++
    Jcr4S02614.10  66 REKFTSDEIDLMVRLHNLLGNR-WSLIAGRLP-GRTANDVKNFWNTHM 111
                      789*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.124164IPR017930Myb domain
SuperFamilySSF466892.36E-2711107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-221163IPR009057Homeodomain-like
SMARTSM007173.8E-151262IPR001005SANT/Myb domain
PfamPF002497.6E-171360IPR001005SANT/Myb domain
CDDcd001673.10E-111560No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2264114IPR009057Homeodomain-like
SMARTSM007172.8E-1365113IPR001005SANT/Myb domain
PROSITE profilePS5129417.29365115IPR017930Myb domain
PfamPF002493.6E-1366110IPR001005SANT/Myb domain
CDDcd001671.64E-968111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEGPTPPVLA LRKGAWTPVE DELLRNCIQR HGEGKWHKVP SRAGLNRCRK SCRLRWLNYL  60
KPDIKREKFT SDEIDLMVRL HNLLGNRWSL IAGRLPGRTA NDVKNFWNTH MRKKQKSYNP  120
YSEEDGMKGK TVKTITSTKN EIVKPRPFKL SKNISSFIGT LQDKDHQGHS DNHFGKASMP  180
VEFPPSGNKE DKEINISNTI NPLQEKVSAD SLKGRVAVRK MTGGVTFPMR RKSGIFSSMK  240
NKNQTLMRLR CR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-21111142104MYB PROTO-ONCOGENE PROTEIN
1h8a_C9e-211111425127MYB TRANSFORMING PROTEIN
1mse_C7e-21111142104C-Myb DNA-Binding Domain
1msf_C7e-21111142104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346953e-52KM034695.1 Jatropha curcas clone JcMYB075 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080583.10.0transcription factor MYB75-like
SwissprotQ9FNV92e-60MY113_ARATH; Transcription factor MYB113
TrEMBLA0A067K5D72e-93A0A067K5D7_JATCU; Uncharacterized protein
TrEMBLA0A097HUP62e-93A0A097HUP6_JATCU; MYB family protein
STRINGVIT_14s0006g01290.t015e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.19e-63myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]