PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02701.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 231aa MW: 26495.7 Da PI: 4.8017

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02701.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.8	1e-39	68	167	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+l+r+C ++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+ +la Jcr4S02701.10 68 SCAACKFLKRRCITNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQLDLAI 163 6*********************************************************************************************99 PP DUF260 97 lkee 100 +k++ Jcr4S02701.10 164 AKAR 167 8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.359	67	168	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.2E-39	68	165	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MKMDGERKEM KRKMKGDEEE DEDEEDVEDE DEENEEGKLK WKSRDIGQRR WTVIYEAMRS 60 QEPRSSSSCA ACKFLKRRCI TNCIFAPYFR SDEPKKFAKV HKVFGASNVS KILIEVPEEQ 120 REDTVNSLAY EAEARLRDPV YGCIGAIALL QRKMVELQLD LAIAKARLAK YTANSSFSSS 180 PFLHDYPSNL PPNFSEFPAC SGFIGNFSQN SSESSQDGFI NIDFSQFPYI F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-46	63	191	6	127	LOB family transfactor Ramosa2.1
5ly0_B	2e-46	63	191	6	127	LOB family transfactor Ramosa2.1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	13	RKEMKRKM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087008.2	1e-138	LOB domain-containing protein 21
Swissprot	Q9SRL8	2e-59	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A067LKA9	1e-136	A0A067LKA9_JATCU; Uncharacterized protein
STRING	cassava4.1_017642m	5e-92	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-61	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]