PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02726.20
Common NameJCGZ_24979, LOC105631628
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 291aa    MW: 32396.5 Da    PI: 6.3589
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02726.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-1693140148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT eEd  lv++v  +G g+W++ ar  g++Rt+k+c++rw++yl
    Jcr4S02726.20  93 RGPWTVEEDMTLVNYVCSHGEGRWNAAARSAGLKRTGKSCRLRWLNYL 140
                      89********************************************97 PP
2Myb_DNA-binding49.31.1e-15146187144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w
    Jcr4S02726.20 146 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYW 187
                      7999******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.29288140IPR017930Myb domain
SuperFamilySSF466892.06E-3090187IPR009057Homeodomain-like
SMARTSM007171.9E-1192142IPR001005SANT/Myb domain
PfamPF002492.1E-1493140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2294147IPR009057Homeodomain-like
CDDcd001671.96E-995140No hitNo description
PROSITE profilePS5129423.739141195IPR017930Myb domain
SMARTSM007175.6E-14145193IPR001005SANT/Myb domain
PfamPF002492.7E-14146187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-22148194IPR009057Homeodomain-like
CDDcd001671.05E-6166189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGFWVFDSDE SITNSGSTSS SSRQSGDDAG DDSFESTSQH SCDNSCSSVA NFKKTDDMNW  60
GLEPGSLVNP DHEDRQMISD KDDQKEEDID IRRGPWTVEE DMTLVNYVCS HGEGRWNAAA  120
RSAGLKRTGK SCRLRWLNYL RPDIRRGNIT LEEQLLILEL HSRWGNRWSK IAQHLPGRTD  180
NEIKNYWTRS VQKQAKQLKC DVNSKQFKDS MRYLWMPRLI ERIQAASGSS TCQAPVTSGS  240
SMGQAWFTCG SSTGQDQVTS GSSMGQSRFV SGSSTSQTWS TAGSSTGQNT P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-258419518128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346650.0KM034665.1 Jatropha curcas clone JcMYB045 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069192.10.0transcription factor MYB108
SwissprotQ10MB47e-87MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A067L9020.0A0A067L902_JATCU; MYB family protein
STRINGXP_009612140.12e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-77myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  5. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  6. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]