PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02726.50
Common NameJCGZ_24976
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 177aa    MW: 19755.4 Da    PI: 4.5139
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02726.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16129176148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+W+ eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw+ ++
    Jcr4S02726.50 129 RGPWSVEEDAILINYINIHGEGHWNSAARCAGLKRTGKSCRLRWLRLK 176
                      89******************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.235124177IPR017930Myb domain
SuperFamilySSF466892.77E-13127175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-16128174IPR009057Homeodomain-like
SMARTSM007177.7E-8128176IPR001005SANT/Myb domain
PfamPF002498.7E-14129176IPR001005SANT/Myb domain
CDDcd001671.54E-10131176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MRFWVFDSDE SSPNSGSTSS STGQSWDDAG NDPRGSSSQS SCNYVGGGSD RVSSESCSSV  60
ANFKKTDDMN GQIRITMSNN QKDQVFLENN NEQDAESCCA SCEREEEEYT DIRKGAWTLE  120
EDAILDFRRG PWSVEEDAIL INYINIHGEG HWNSAARCAG LKRTGKSCRL RWLRLKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534037.11e-128uncharacterized protein LOC110009244
TrEMBLA0A067KXU21e-127A0A067KXU2_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-22myb domain protein 78
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]