PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02785.10
Common NameBRC2, JCGZ_18278, LOC105642072
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TCP
Protein Properties Length: 452aa    MW: 50870.8 Da    PI: 8.6725
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02785.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP149.62e-461082522133
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsss 87 
                     gkkdrhski+T++g+RdRR+Rls+ +a++fFdLqd+LGfdk+skti+WL++++k+aikel+++          ss+s+se+ ++s+ +       
  Jcr4S02785.10 108 SGKKDRHSKIYTAQGPRDRRMRLSLRIARKFFDLQDMLGFDKASKTIDWLFTKSKAAIKELADSvprvkqcnsfSSTSESEVMSGSKTV------- 196
                    68**************************************************************8887666644333333332222222....... PP

            TCP  88 g..............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                    +              +  +s    k+s+k+++   ++++esr+karararert+ek++ik
  Jcr4S02785.10 197 TvgengdkkemvlteD--SSFLRLKQSKKPNK--TAFNQESREKARARARERTKEKQKIK 252
                    1233334467776422..22223333333333..679********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-44109250IPR005333Transcription factor, TCP
PROSITE profilePS5136937.191110168IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.573231248IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MFSSTSNFNP FQYTENPNSL IQEDNSSHFL HFPPAIPFLD DADLLLNEFL SQPHQQEQQV  60
LVCDTNLVAE TAQEVPATNS SKKITQNNKK KKNDIKAPKT LPVARKRSGK KDRHSKIYTA  120
QGPRDRRMRL SLRIARKFFD LQDMLGFDKA SKTIDWLFTK SKAAIKELAD SVPRVKQCNS  180
FSSTSESEVM SGSKTVTVGE NGDKKEMVLT EDSSFLRLKQ SKKPNKTAFN QESREKARAR  240
ARERTKEKQK IKILDKSKQE NPNNLGFTGK MAGEEQEEEE EEKGHDRNYF SQDQVDKFLG  300
LTDAQKSSSI FDLSSRNDVV SNGADFKDEF SCFAGNWEIS NGRGNYGNNR HCAIPNMKLL  360
TTGDFHVQNP NSIFMTTSNS QEQNLTSVIM AATTLNTQEG NPNSVFMNFS ISNKQNPNPI  420
PMAATDAALP SHSLIEDLFC NPKASNNYGN LY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4544660.0KM454466.1 Jatropha curcas TCP transcription factor BRC2 (BRC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306857.10.0transcription factor TCP12
TrEMBLA0A067JZQ40.0A0A067JZQ4_JATCU; TCP transcription factor BRC2
STRINGcassava4.1_025363m1e-140(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-30TCP domain protein 12
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Ni J, et al.
    Gibberellin Promotes Shoot Branching in the Perennial Woody Plant Jatropha curcas.
    Plant Cell Physiol., 2015. 56(8): p. 1655-66
    [PMID:26076970]